Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01097 ATGGGCAAGTCACCTTGCTGTGAGAAGTCGGGTTTGAAGAAAGGACCATGGACCCCAGAAGAAGACCAGAAGCTATTAGCTTATATTGAACAGCATGGCCATGGAAGCTGGCGTGCCTTGCCAGCCAAAGCTGGGCTTCAAAGATGTGGGAAGAGTTGCAGACTGAGGTGGACTAACTATCTCAGACCAGACATCAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAGACCATCATCCAGCTACATGCTTTACTTGGAAACAGATGGTCAGCTATTGCAACTCACCTACCCAAGAGAACAGACAACGAGATCAAGAACTACTGGAATACCCATTTGAAGAAGAGGCTAACAAAAATGGGCATAGACCCTGTTACGCACAAGCCAAAGACGGATGGCGAGGGTTCTGGCCGGTCCAAGGACGTTGCTAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCCAGACTAGTCCGCGAGTCTAAGCATTTGCAAGGATCCCATGCTACATTGCTCCTGACAACTAATCATCATCAGCAGCAGCAGCATGCATGTGAGACATCTCGGTTCATCATCAGCAACAAAATGCCAACTCTATGTCAACAATCAGCTGGAGTTCCACCATGTCTGGATGTTATCAAAGCATGGCAGGGTTCATGGTCAAATACTCCTTGTTTCACGAAAAACAATGGCATGGGGGTTAATGACATTTACTCAATGATGTTTGCAACTGATGACCTCCAGTCGCCAACTTCAACTTTAAGCTTCTCAGATAACATGCTTGCGGTCCCAAGTGGTAATATCAACTTACGGTTGTTAAATCAAGGCTCTCTTTTTCCAGGTAGCACTACTATCAATACCATCACCACCTCTGCTAATGTCGTATCTGCAGAAGGAGCAGCGGGGGGTAAAACTGGTAATGGCACGGACTGCATAATTCAAGAATGTTGTGATGATCAACAACATCACAATGAGCCATGGTCCATAAAATCTAACAACATCAATAAGGACAATATTGATGCAGTTATTGTGGAAAGTAATGATTTGATTAATATGCGAGCTTATTCGGTTCACGATTCGTCATGGTTTTTGGGAGCTACTGTTAATGAAACCACAGTTGCAGTTGATGATCCTGATGACAATAATGTATCATCAACTGATTTTCAAATTGATACAACAGAAGCTGCTTCTGGCGCTGGTGAAATTCTTCACTTTGGTAATAGTGATGATCATGCTGATATGTTGGTGTACAATGAAGACAATTATGGAAACGATCAAGAAAGCCTGGGAAATACTAACGTGAACTGTTACTGGAATAGCATACTCCACAACTTGGTGAATGCTTCGTCTTCTTCAGTGATTTGA 1377 0.4408 MGKSPCCEKSGLKKGPWTPEEDQKLLAYIEQHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKTDGEGSGRSKDVANLSHMAQWESARLEAEARLVRESKHLQGSHATLLLTTNHHQQQQHACETSRFIISNKMPTLCQQSAGVPPCLDVIKAWQGSWSNTPCFTKNNGMGVNDIYSMMFATDDLQSPTSTLSFSDNMLAVPSGNINLRLLNQGSLFPGSTTINTITTSANVVSAEGAAGGKTGNGTDCIIQECCDDQQHHNEPWSIKSNNINKDNIDAVIVESNDLINMRAYSVHDSSWFLGATVNETTVAVDDPDDNNVSSTDFQIDTTEAASGAGEILHFGNSDDHADMLVYNEDNYGNDQESLGNTNVNCYWNSILHNLVNASSSSVI* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01097 458 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte12g01097 458 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 195 - -
Pte12g01097 458 CDD SANT 69 112 IPR001005 -
Pte12g01097 458 FunFam MYB-related transcription factor 13 66 - -
Pte12g01097 458 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte12g01097 458 FunFam MYB transcription factor 69 116 - -
Pte12g01097 458 CDD SANT 16 61 IPR001005 -
Pte12g01097 458 Gene3D - 13 66 - -
Pte12g01097 458 SMART sant 13 63 IPR001005 -
Pte12g01097 458 SMART sant 66 114 IPR001005 -
Pte12g01097 458 Gene3D - 69 116 - -
Pte12g01097 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte12g01097 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte12g01097 458 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte12g01097 458 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte12g01097 458 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01097 Pte-Chr12 28182644 28184972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01097 1 270 MYB Transcription Factor Family AT3G01140 61.397 2.06e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte12g01097 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01097 K09422 - mnt:21398771 398.282