Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01093 ATGTCGGAGTCCGAGGAGCATCACTTTGAATCCAAGGCCGACGCCGGTGCTTCCAAGACCTTCCCCCAACAGGCTGGCACCATCCGTAAGAACGGATACATTGTCATCAAGGGGAGACCCTGCAAGGTTGTTGAGGTTTCCACTTCCAAAACTGGAAAACATGGTCATGCTAAGTGCCACTTTGTTGCTATCGACATCTTCACTGCAAAGAAGCTTGAAGATATCGTGCCTTCTTCCCACAACTGTGATGTTCCTGAGGTTACCCGTACTGACTACCAGCTGATTGATATCTCTGAGGATGGATTTGTGAGCCTTCTGACTGATAATGGCAGCACAAAGGATGACCTCAGGCTTCCAACCGATGAAAATCTGCTTACCCAGATCAAGGATGGATTTGCTGAGGGTAAGGATCTTGTTGTGTCTGTCATGTCTGCCATGGGAGAGGAGCAGATCTGTGCATTGAAGGACATTGGTCCCAAGAACTGA 486 0.4877 MSESEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDENLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01093 161 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 87 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Pte12g01093 161 SUPERFAMILY Translation proteins SH3-like domain 16 94 IPR008991 -
Pte12g01093 161 SMART eIF_5a_2 86 155 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Pte12g01093 161 FunFam Eukaryotic translation initiation factor 5A 1 86 - -
Pte12g01093 161 MobiDBLite consensus disorder prediction 1 22 - -
Pte12g01093 161 FunFam Eukaryotic translation initiation factor 5A 87 159 - -
Pte12g01093 161 PIRSF Transl_init_eIF5A 1 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Pte12g01093 161 Gene3D - 87 160 IPR012340 -
Pte12g01093 161 CDD S1_eIF5A 87 157 - -
Pte12g01093 161 SUPERFAMILY Nucleic acid-binding proteins 87 157 IPR012340 -
Pte12g01093 161 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Pte12g01093 161 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 51 58 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Pte12g01093 161 NCBIfam translation initiation factor IF-5A 19 154 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Pte12g01093 161 Gene3D - 1 86 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01093 Pte-Chr12 27691741 27694456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01093 5 160 Eukaryotic Initiation Factors Gene Family AT1G13950 89.103 2.99e-101 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01093 K03263 K02180 csv:101211156 313.538