Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte12g01069 | ATGGAGGAAAAGAGATTTATTTGTAAGTTCTGCAACAAGAGATTCCCATGTGGGAAGTCTTTGGGTGGTCACATAAGGACTCATATGAATGAGTACTCAGCTCGAGAAAACGGTACCAAGGGCAATGCAGATTTTGTCACGGTTGCATCTTTCGATGGTGGGAGGAAGAGGAGGAGGGATTCTGCCGTATCTGAAGCAGATGCTGCTGCTGCTGGGAATTCTGCTTATGGTCTCAGAGAGAACCCGAAGAAGACAATGAGGTTTGTGGATTCTGCAAGCGCCACTGCCTTTGAGACAAAGCTCTGCAAGGAATGTGGCAAAGGTTTTGCGTCTCTGAAAGCTCTGTGTGGCCACATGGCTTGTCATTCAGAAAAGGAAAGGGGAACCATCAAGTTTGAAGACAATTCTGGGGTTAGTGGGAAAGATAAGTTTGTGATGGACAGTCAATCTGATACTGAGACTTCAACCCCAAGTCATCCAAGGAGATCAAAGAGGATGATGAGATTCAAGAACCTCTATCCTCAACCTTCGCCTTCTTCATTGGCCAACAACTCTTCACTGACAGAGGTTGAGCTTGAGCAAGAAGAGGGTGCGAAGTTGTTGCTCTTGCTGTCCAAGGATTCAGGTTCCAGGCGTGGATTGAACTCCATTGCAGATTCTTCTGAAAACAATTCTGTAGTTTTGGAGGTGAAGTCTCCATCTGTTGGTACCAAGAACAAGCAACAACACAATGGAAAATTGAAGTTTAAATCTGCTGAGGTTGCTGTATCGGATGATTCAAATTCTGAGTACTTTCTAAGTGGTTATAATAAAATTGAGTCAGAAGTTTCAGCTGATGGTTACCCCAGGAATAGTGACTTTAAGAAACCGAAAGTGGACAGTTCTGGATTTGAGCATTTGGGATCCGAATTAGGAAAAAGTGTGAACAGAATCAGAGTTAAGAATTCTGAATCAAACAAGAAAATTTTCAAGGGCTTAGATTTTGATCAAGCAGAGGGAACTATGAGGAAGGAAGAGAAGAGTTATTCTTTTAGTCCTCATCGAAGCACACCCTCTAAGAAAGTTGTCAATGGTGCTGCAGCCGGTGAAGAAGTTTATGAAAGTTTGACGAACAAAAATGTCAATAGTGGATATGAGTCAACATATGAGAGTGATGAGCAAAGCACTGATTCTGATTCATTCTCAGTTCCAATTCGTCGTGTAAGTAAATCCCTGAAGCAAAAACAGTCCAGCAATTCCAAGAAGAAGATGTCAAGCTCAAAGAAAAATAAGGGGCATGAGTGCCCCATCTGCTACAGGATTTTCAAGTCAGGGCAAGCCTTAGGAGGTCACAAAAGATCTCATTTTGTTGGAGGGTCTGAAGAAAACACCTTGATAATCAAACAAGATACCTCTCATGTTCAATGTTTAATTGATCTCAATCTACCTGCTCCAGTTGATTAA | 1443 | 0.422 | MEEKRFICKFCNKRFPCGKSLGGHIRTHMNEYSARENGTKGNADFVTVASFDGGRKRRRDSAVSEADAAAAGNSAYGLRENPKKTMRFVDSASATAFETKLCKECGKGFASLKALCGHMACHSEKERGTIKFEDNSGVSGKDKFVMDSQSDTETSTPSHPRRSKRMMRFKNLYPQPSPSSLANNSSLTEVELEQEEGAKLLLLLSKDSGSRRGLNSIADSSENNSVVLEVKSPSVGTKNKQQHNGKLKFKSAEVAVSDDSNSEYFLSGYNKIESEVSADGYPRNSDFKKPKVDSSGFEHLGSELGKSVNRIRVKNSESNKKIFKGLDFDQAEGTMRKEEKSYSFSPHRSTPSKKVVNGAAAGEEVYESLTNKNVNSGYESTYESDEQSTDSDSFSVPIRRVSKSLKQKQSSNSKKKMSSSKKNKGHECPICYRIFKSGQALGGHKRSHFVGGSEENTLIIKQDTSHVQCLIDLNLPAPVD* | 481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte12g01069 | 480 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 480 | - | - | |
| Pte12g01069 | 480 | MobiDBLite | consensus disorder prediction | 142 | 156 | - | - | |
| Pte12g01069 | 480 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 428 | 448 | IPR013087 | - | |
| Pte12g01069 | 480 | MobiDBLite | consensus disorder prediction | 377 | 414 | - | - | |
| Pte12g01069 | 480 | MobiDBLite | consensus disorder prediction | 334 | 357 | - | - | |
| Pte12g01069 | 480 | Pfam | C2H2-type zinc finger | 426 | 448 | - | - | |
| Pte12g01069 | 480 | Pfam | C2H2-type zinc finger | 5 | 29 | - | - | |
| Pte12g01069 | 480 | Pfam | C2H2-type zinc finger | 102 | 124 | - | - | |
| Pte12g01069 | 480 | SUPERFAMILY | beta-beta-alpha zinc fingers | 4 | 122 | IPR036236 | - | |
| Pte12g01069 | 480 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 426 | 448 | IPR013087 | - | |
| Pte12g01069 | 480 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 102 | 122 | IPR013087 | - | |
| Pte12g01069 | 480 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 100 | 127 | IPR013087 | - | |
| Pte12g01069 | 480 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 28 | IPR013087 | - | |
| Pte12g01069 | 480 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 6 | 33 | IPR013087 | - | |
| Pte12g01069 | 480 | SMART | c2h2final6 | 426 | 448 | IPR013087 | - | |
| Pte12g01069 | 480 | SMART | c2h2final6 | 6 | 28 | IPR013087 | - | |
| Pte12g01069 | 480 | SMART | c2h2final6 | 100 | 122 | IPR013087 | - | |
| Pte12g01069 | 480 | MobiDBLite | consensus disorder prediction | 377 | 425 | - | - | |
| Pte12g01069 | 480 | Gene3D | Classic Zinc Finger | 1 | 61 | - | - | |
| Pte12g01069 | 480 | MobiDBLite | consensus disorder prediction | 140 | 164 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte12g01069 | Pte-Chr12 | 26735094 | 26736536 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte12g01069 | 1 | 480 | C2H2 Transcription Factor Family | AT1G26610 | 39.306 | 8.23e-95 | 293 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Pte12g01069 | zf-C2H2_6 | 2.5e-06 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte12g01069 | - | - | pcin:129310630 | 390.193 |