Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01053 ATGTCACAAGGAGCCGAAATTGAAGATCGTGTAGATTATGACGAGGAAAATTACATGGAGGAGATGGATGATGATGTTGAGGAACAGGTAGATGAGGATGGTTCTGATGGAGGTGTTGATGAAAACAATGAAGAGAGTATTGAAGAAGAAGAAGAATTACTTGAAGATGCACCAGCAGAGGCTAATGAGAAAGATCATTTTCCTGAATCAGACAAGGGTGAGGTAGCTGTTGAATCAGTGGAAGATGAACAGAAGCCCGCTGCTTCAATTGATGAAGATGAAAGGGAGGAACATGATCAACTTCTCGCACTTCCTCCTCATGGTTCTGAAGTTTTCATTGGGGGACTTCTTCGCGATGTGTCTGAAGACGATTTACGTGACCTATGTGAACCATTAGGTGAAACTTTGGAGGTGAGATTAATGAAAGATAAGGAAACAGGGGAAGGCAAGGGATATGCTTTTGTAGCATTTAAAACAAAAGAGGTCGCACAAAATGTCATTGAAGCATTGCACAACAAAGAATTCAAGGGTAGATCCTTGAGATGTTCACTCTCAGAAACTAAACACAGACTGTTCATTGGGAATGTTCCGAAGAACTGGACAGAAGATGAGTTTCGTAAAGTCATTCATGGTGTTGGTCCTGGAGTTGAGAATATTGAGCTCATAAAGGACCCACAAAATCCAGGCAGGAATCGAGGGTTTGCTTTTGTCTTGTACTACAACAATGCTTGTGCTGATTATTCGAGGCAGAAGATGTCAAATGCAAATTTTAAGCTGGAGGGGAACTCACCAACTGTCACATGGGCTGATCCTAAGACTTCACCTGATCAATCTGCTTCTGCACAGGTAAAAGCTCTTTATGTGAAGAACATTCCCGACAATACTACCACTGAACAACTGAAGGAACTGTTTTCTCACCATGGAGAAGTGACAAAAGTAGTCATGCCACCTGGGAGAAATGGGGGGAAACGCGATTTTGGTTTCATCCACTATGCTGAGAGATCTAGCGCATTGAAGGCTGTCAAAGATACAGAGAAATATGAAATAGATGGTCAAATATTGGAAGTTGTTCTTGCTAAGCCGCAAACGGAAAAGAAGCCTGATGCACATTCTTACAACCCAGGGTCTCATGCAAACCATGTTCCCCATCCTGCCTTCAGTGGCTTTCCGCCAAATGCATATGGGTCCGTAAGAGCTGGATATGGGGTTGCTGCTAGTTTTCAGCAGCCAATGATATATGGTCGCGGTCCAATGCCAGCTGGAATGCAAATGGTGCCGATGGTTTTACCAGATGGGCGGATTGGTTATGTTCTCCAACAGCCTGGTGTACAGATGCCATCGCCACCAAGACCTCGTAGAAGCAACGGTCCAAGTGGTCTGTCCGGAAGAGGAGATGGCGGTGATGAAGGCAACCGCAACAGGAGATACCGACCATACTAG 1440 0.4444 MSQGAEIEDRVDYDEENYMEEMDDDVEEQVDEDGSDGGVDENNEESIEEEEELLEDAPAEANEKDHFPESDKGEVAVESVEDEQKPAASIDEDEREEHDQLLALPPHGSEVFIGGLLRDVSEDDLRDLCEPLGETLEVRLMKDKETGEGKGYAFVAFKTKEVAQNVIEALHNKEFKGRSLRCSLSETKHRLFIGNVPKNWTEDEFRKVIHGVGPGVENIELIKDPQNPGRNRGFAFVLYYNNACADYSRQKMSNANFKLEGNSPTVTWADPKTSPDQSASAQVKALYVKNIPDNTTTEQLKELFSHHGEVTKVVMPPGRNGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQILEVVLAKPQTEKKPDAHSYNPGSHANHVPHPAFSGFPPNAYGSVRAGYGVAASFQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQMPSPPRPRRSNGPSGLSGRGDGGDEGNRNRRYRPY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01053 479 Gene3D - 190 270 IPR012677 -
Pte12g01053 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Pte12g01053 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 258 IPR000504 GO:0003723
Pte12g01053 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 352 IPR000504 GO:0003723
Pte12g01053 479 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 189 - -
Pte12g01053 479 Gene3D - 272 402 IPR012677 -
Pte12g01053 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 361 IPR000504 GO:0003723
Pte12g01053 479 MobiDBLite consensus disorder prediction 59 98 - -
Pte12g01053 479 MobiDBLite consensus disorder prediction 439 479 - -
Pte12g01053 479 MobiDBLite consensus disorder prediction 1 98 - -
Pte12g01053 479 SUPERFAMILY RNA-binding domain, RBD 279 381 IPR035979 GO:0003676
Pte12g01053 479 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 418 - -
Pte12g01053 479 SMART rrm1_1 285 357 IPR000504 GO:0003723
Pte12g01053 479 SMART rrm1_1 190 267 IPR000504 GO:0003723
Pte12g01053 479 SMART rrm1_1 110 183 IPR000504 GO:0003723
Pte12g01053 479 MobiDBLite consensus disorder prediction 362 384 - -
Pte12g01053 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Pte12g01053 479 Gene3D - 6 189 IPR012677 -
Pte12g01053 479 MobiDBLite consensus disorder prediction 9 58 - -
Pte12g01053 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 271 IPR000504 GO:0003723
Pte12g01053 479 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 190 270 - -
Pte12g01053 479 SUPERFAMILY RNA-binding domain, RBD 106 272 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01053 Pte-Chr12 25797514 25802539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01053 111 436 Eukaryotic Initiation Factors Gene Family AT1G71770 26.702 7.34e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01053 K13161 - gmx:100790907 677.552