Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01049 ATGAAGGTTGAAACTTTCATGGCGAAAAATGTTTTAAACTTTCTAACTAGAAGGCCCTTTTCTTCTACTCCTGGAATTCCTAGTCTGTACTCTTTTCTCCAACCCGCCATTTTTTCTTTGACGAAAAACCCTCCAATTTCTCTTCAAGCTCCGACTCTTCCAACGTCACCTCCACAGGCTCTTGACCCAGAAACCATATCCGCTTTGCAAATCAACCTTCATAGGTCTCTTTTAACCCGTGAAACTGATGAGGCATGGAAGTCTTTCAAAACTCTCACAAGTAATTCAACTTTCCCAAGTAAGTCTCTCACTAACTCTCTCATAACCCATCTATGTTCGCATGGAGATACTCATAACCTCAAAAGGGCTTTTGTATCCGTGGTTTATGTTATACAGAAAAACCCAGAAATATTAGATTCTGAAACGGTTGGGACATTGTTTAATTCCATGAGATGTGCAAACACTGCAACCCCTGCTTTTGCTCTGATTAAATGCATGTTCAAGAATAGATTTTTTATACCATTCAGTGTATGGGGTAATGTTCTTGTTGAAATTTGTAGAAAGAATGGAAGTTTCGTTGCTTTTCTCCGAGTTTTTGAAGAAAATTGTAAGGTCGCTTTGGATGAGAAGTTGCATTTTATGTATCCTGACTTGGCTGCTTGTAATGCTGCACTAGAAGGATGTTGTTGTGAGATTGAGTCTGTCACTGATGCCGAGCGTGTTGTTGAAACAATGTCGGTATTGGGTGTTAGGCCAGATGAAGCTAGCTTTGGATTTCTGGTTTATTTGTATGCACTGAAGGGACTCGAAGGAAAGATAAATGAGTTGGAAGATCTGATGAGTGGATTTGGTTTCTCTAAAAAAAAGATATTCTATAGTAATGTGATACGGGGATATGTAAAGGCAGGAAATCTGGAATCTGTTTCCACAGCTATTCTGCATAGTTTAAAAGAAGAATGTGGTAGGAGTTGGAATTTTGACGAAGAAACACACTGTGAGGTTGTTCAAGGATTTCTTCAAAAGAAAAGTATTAAAGAATTGTCAAATTTAATCATTGAAGCTCAGAAGGTGGAGCACTCAACCGTCGCGGTCAATAGATCGATTGGCTATGGCATTGTTAGTGCTTGTGTTAACACTGGATTAGCAGATAAGGCACACAACATTCTTGATGAAATGAATGCTATGGGAGGGTTTGTTGGTTTAGGCGTCTATGTGCCGATCTTAAAGGCTTACTGTAAAGAACAACGAACAGCAGAAGCAACACAATTGGTCACAGAAATTAGTGGTTTGGGCCTTCAATTGGATGTTGGGTTGTATGATAATCTGATAGAAGCATCAATGTCTTGTCAGGATTTCCAATCAGCCCTCTCCTTGTTTAGGGACATGAGAGAAGCTAGGATTCCCAACTTGAAAGGAAGTTACCTGACCATAATGACAGGTTTGATGGAGAACCACCGACCTGAGTTGATGGCAGCATTCTTGGATGACGTTGTTGGGGATCCTAGAATAGATGCTGGTACTCATGACTGGAATTCAATTATTCATGCTTTTTGTAAAGCTGGAAGGCTAGAAGATGCAAGGAGAACATTCAGAAGGATGTCATTTCTTCAATTTGAACCAAATGACCAGACATACTTGTCCCTTATTAATGGATATGTGTTGGAAGAGAAATATTTTAGTGTTTTGATGTTATGGAATGAGGTGAAGCGGAAAATATCAACTGATAGACAGATGGGGATTACATTCAATCATAACTTGGTTGATGCATTTCTGGTGGCATTGGTTAAAGGAGGTTTCTTTGATGCAGTTATGCAAGTTGTTGAGAAATCTAATGAGATGAAAGTTTTTGTGGACAAATGGAGGTACAAGCAGGCATTCATGGAAAAGCATAAAAAATTGAAAGTTGCAAAGGTGAGGAAAAGAAGCCTAAAAAAAACGGAGGCGCTTGTTGCTTTCAAAAATTGGGCGGGATTAAGTACCTAA 1983 0.3923 MKVETFMAKNVLNFLTRRPFSSTPGIPSLYSFLQPAIFSLTKNPPISLQAPTLPTSPPQALDPETISALQINLHRSLLTRETDEAWKSFKTLTSNSTFPSKSLTNSLITHLCSHGDTHNLKRAFVSVVYVIQKNPEILDSETVGTLFNSMRCANTATPAFALIKCMFKNRFFIPFSVWGNVLVEICRKNGSFVAFLRVFEENCKVALDEKLHFMYPDLAACNAALEGCCCEIESVTDAERVVETMSVLGVRPDEASFGFLVYLYALKGLEGKINELEDLMSGFGFSKKKIFYSNVIRGYVKAGNLESVSTAILHSLKEECGRSWNFDEETHCEVVQGFLQKKSIKELSNLIIEAQKVEHSTVAVNRSIGYGIVSACVNTGLADKAHNILDEMNAMGGFVGLGVYVPILKAYCKEQRTAEATQLVTEISGLGLQLDVGLYDNLIEASMSCQDFQSALSLFRDMREARIPNLKGSYLTIMTGLMENHRPELMAAFLDDVVGDPRIDAGTHDWNSIIHAFCKAGRLEDARRTFRRMSFLQFEPNDQTYLSLINGYVLEEKYFSVLMLWNEVKRKISTDRQMGITFNHNLVDAFLVALVKGGFFDAVMQVVEKSNEMKVFVDKWRYKQAFMEKHKKLKVAKVRKRSLKKTEALVAFKNWAGLST* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01049 660 Gene3D Tetratricopeptide repeat domain 500 572 IPR011990 GO:0005515
Pte12g01049 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 252 IPR002885 -
Pte12g01049 660 Pfam Pentatricopeptide repeat domain 423 468 IPR002885 -
Pte12g01049 660 Pfam PPR repeat family 510 552 IPR002885 -
Pte12g01049 660 PANTHER BNAC05G43320D PROTEIN 21 659 - -
Pte12g01049 660 NCBIfam pentatricopeptide repeat 510 541 IPR002885 -
Pte12g01049 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Pte12g01049 660 Pfam PPR repeat 292 307 IPR002885 -
Pte12g01049 660 Pfam PPR repeat 373 396 IPR002885 -
Pte12g01049 660 Gene3D Tetratricopeptide repeat domain 371 485 IPR011990 GO:0005515
Pte12g01049 660 Gene3D Tetratricopeptide repeat domain 180 370 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01049 216 609 Glycosyltransferase AT1G05670 19.250 2.99e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01049 - - qsa:O6P43_032910 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01049 12 25507305 25510159 Pte12g01049 12 25507305 25510159 RCT