Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01043 ATGCTTAATGATGATGCTTCATCTTCTTCTGTCACTGGTGCTGGCGGCCATGGAAGCTTTCAATATCAATCGAAAGGCGCTCTTTTCTATTCGCATTACTCTTCTCTGTTCTCTGACAAGCAATTCGGTTTTGACGTGCCTATGAGTTCCTTCGAAGAAAGCTCCAGTGTAGATTACTTGTTCTCAAGCCCTTTGATTCGCACACAGCCTGAGTATGACTCTTGCGCTGTGCAGAAAAACCAGGATCTGATAAACGGCCATGCACTCTGCCTTTCTCACCTCCATGACACTAACAAAGAAGCTGAAGCTCTAAGGCGTGAAAATACTCATCTTCGTACAGTTAACCAGGAGCTAAACAAGCAATTGACTTTGTTCATTAAGGCTAGGGTTAATAATCAGCACCATCAGCTAGATGGTTCGTCGTCTGGCCTTAAGTTTCCGCTGGATATTGCAAAAGAATTTGAAAGCCTCTCTGTTCATAGGAATAGAAATGAACGCAGTGATGATGGTGGTTATTGGAAGGAGAAGGAGGAAGAATCTGATGAGAGTCCAACTAGTGTGATTGAAGATTCTAGCGAAGTCCAGAGGTTTTCTCTGCCGAAGAGTATATCTGTTCGATCAAATGGATACTTGAAGACGGCTACAGCACCTATAACTACCACTACAGCACAGACTAAAGGCACCAATCGGCCACCTCGAACCTCCAGCCCACCCAATGCTCATGCTCAAAAGGTGTATGTGGGTGGAGGACAGAAGGAGGAGCCTCTTGAGATGGTGGTGTACAACCAAGGTATGTACAAGACCGAGTTATGCAACAAGTGGCAGGAGACTGGGACCTGCCCCTATAGAGGCCAGTGCCAATTTGCTCATGGGATTGAGGAGCTTCGCCCAGTTATTCGACACCCACGGTATAAGACTGAAGCATGCAGGATGGTTCTTGCTGGAGTTGTCTGTCCATATGGTCATCGATGCCACTTCAGGCATGCCCTCTCTGACCTTGAGAAAGCTATAGCTCATCAGCCAGCCACTCCTAGTAGAGCAACCAAGTTTAATAAGTAG 1059 0.4636 MLNDDASSSSVTGAGGHGSFQYQSKGALFYSHYSSLFSDKQFGFDVPMSSFEESSSVDYLFSSPLIRTQPEYDSCAVQKNQDLINGHALCLSHLHDTNKEAEALRRENTHLRTVNQELNKQLTLFIKARVNNQHHQLDGSSSGLKFPLDIAKEFESLSVHRNRNERSDDGGYWKEKEEESDESPTSVIEDSSEVQRFSLPKSISVRSNGYLKTATAPITTTTAQTKGTNRPPRTSSPPNAHAQKVYVGGGQKEEPLEMVVYNQGMYKTELCNKWQETGTCPYRGQCQFAHGIEELRPVIRHPRYKTEACRMVLAGVVCPYGHRCHFRHALSDLEKAIAHQPATPSRATKFNK* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01043 352 MobiDBLite consensus disorder prediction 161 194 - -
Pte12g01043 352 PANTHER CCCH ZINC FINGER/TIS11-RELATED 86 337 IPR045877 GO:0003729
Pte12g01043 352 SUPERFAMILY CCCH zinc finger 299 334 IPR036855 GO:0046872
Pte12g01043 352 SUPERFAMILY CCCH zinc finger 262 297 IPR036855 GO:0046872
Pte12g01043 352 SMART c3hfinal6 265 292 IPR000571 GO:0046872
Pte12g01043 352 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Pte12g01043 352 Gene3D - 260 298 - -
Pte12g01043 352 Gene3D - 299 336 - -
Pte12g01043 352 Coils Coil 94 121 - -
Pte12g01043 352 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Pte12g01043 352 MobiDBLite consensus disorder prediction 215 241 - -
Pte12g01043 352 MobiDBLite consensus disorder prediction 161 181 - -
Pte12g01043 352 ProSiteProfiles Zinc finger C3H1-type profile. 265 293 IPR000571 GO:0046872
Pte12g01043 352 FunFam Zinc finger protein 36, C3H1 type-like 1 299 335 - -
Pte12g01043 352 FunFam zinc finger CCCH domain-containing protein 15-like 259 298 - -
Pte12g01043 352 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 291 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01043 Pte-Chr12 24939886 24941482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01043 77 338 C3H Transcription Factor Family AT1G68200 48.889 1.66e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte12g01043 zf-CCCH 1.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01043 K18753 - qsa:O6P43_025764 318.931