Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01028 ATGGGTCGGACATTACCAAAGTGTGGGCATGCTTTTCATGTTAATTGCATCTTCATGTGGTTGCATTCACATTCAAGTTGTCCAATTTGCAGAGCTCCTGTAATGGTGGGAGGCACTATTGAAAGTGAATCCCAATTGGGTTCAGTTCATGAGGATGATCCCTCTGCTTTAATAGAAATTGTCATGGATACTCCAAGTGCTGTGATTCATGAGCATAGAAATGAGACAAGTTTGAATGACAACAACATCGTAGACAATGATTCTGTTGAGGGAAATCCTTACTTTCTGCTAGGGTGTTGTAAAGTTTTCCCATCTTCCAATGTTAACGAATCAAATGCTTGA 342 0.4006 MGRTLPKCGHAFHVNCIFMWLHSHSSCPICRAPVMVGGTIESESQLGSVHEDDPSALIEIVMDTPSAVIHEHRNETSLNDNNIVDNDSVEGNPYFLLGCCKVFPSSNVNESNA* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01028 113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 36 IPR013083 -
Pte12g01028 113 ProSiteProfiles Zinc finger RING-type profile. 8 31 IPR001841 -
Pte12g01028 113 Pfam Ring finger domain 7 31 IPR001841 -
Pte12g01028 113 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 3 52 - -
Pte12g01028 113 SUPERFAMILY RING/U-box 3 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01028 Pte-Chr12 23918742 23919925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01028 2 59 Rapid Response to Elicitors AT3G16720 47.619 6.33e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01028 - - qsa:O6P43_014072 120.553