Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01003 ATGGGAATTTCGTGGAGTAGTGGCCGGAGAAGAAACAACTACTATCAGAACCACCCTCCACCGCCTCCGCCTCCTCCGTCGCGACCTTCTTTCTACAGCTACTACCCAGATGCTCACTATTTTCCTCCTCCACCTGCTCTACCAGCTGCACCTCAACCCATAGCACAACCTCATGACTATTTCTTCACCACAACGTCAAATACAACTACAACTTCTGCTCCTCATCACCCTACGCAAACCAATACTAGCTATGCTTACAATACCAATCACCCTCCTTTGCTTCCAGCTCCACCACCACCGCCACCACCTCCTCCTCAAACCCATTTTTACAGTGGCCACCATTCCAGCAGCTACTCTAATTCTATGATAGGTCCGTCCCATTACCATCCATATTATCTAAATCAGGCTAATACGTGGCCATCCTTTCGTCCTCCGGCTGTTCCTGCGCTCCCGCCACCGCCTTATGTCGAGCATCAAAATGCCAAGAAGGTTCGGAATGATGTGAACGTCCATAAAGATACGGTCAAGCTCGAGATAGACGAGTTCAATCCGGATCATCACTTAGTTTCTTTTGTTTTCGACGCCTTGTACGATGGCAGCATCACAATCATGTACTTTGCCAAGGAGGAGGGACAATGTAAATTTGTTCCACTGTATCCTGAAGCTTTCAAGCCAATTAGAATTCCCTTTCAGAAGGGCCTTCATCAGAAATTTATTCAACCGTCAGGATCAGGTATTGATTTGGGCTTCTTTGAGTTGGATGATCTCGCAAAACCTTCATCTTCGGAAGACATATTTCCTCTTGTAATTTGTGCTGAAACAAGCCTGACAATTCAGCCTGTGGATGAAAGTTTATGTGATCCCATACCAGATACATCTCCTCACATGCAGATTACCCAAGCTATAATTGATAAAAACAACAGTACTGATCCATTCAGGGTCAAAGTGATAAGGCAGATTTTATGGATTGAGGGAATCCGTTATGAGTTGCGCGAGTTATATGGAATAGGAAATTCATCTACAGAAGGTTTTAATATCAATGATCCTGGGAAGGAATGCGTAATTTGCATGACTGAACCAAAGGATACTGCCGTCTTACCTTGCAGACATATGTGTATGTGCAGTGAATGTGCAAAAGAATTAAGGCTTCAATCAAATAAGTGCCCCATATGTCGTCAACCAATTGAGGAACTGATAGAGATCAAGATAAATGGTGGCGATCCATGA 1227 0.4442 MGISWSSGRRRNNYYQNHPPPPPPPPSRPSFYSYYPDAHYFPPPPALPAAPQPIAQPHDYFFTTTSNTTTTSAPHHPTQTNTSYAYNTNHPPLLPAPPPPPPPPPQTHFYSGHHSSSYSNSMIGPSHYHPYYLNQANTWPSFRPPAVPALPPPPYVEHQNAKKVRNDVNVHKDTVKLEIDEFNPDHHLVSFVFDALYDGSITIMYFAKEEGQCKFVPLYPEAFKPIRIPFQKGLHQKFIQPSGSGIDLGFFELDDLAKPSSSEDIFPLVICAETSLTIQPVDESLCDPIPDTSPHMQITQAIIDKNNSTDPFRVKVIRQILWIEGIRYELRELYGIGNSSTEGFNINDPGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINGGDP* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01003 408 SMART ring_2 353 391 IPR001841 -
Pte12g01003 408 Pfam Zinc finger, C3HC4 type (RING finger) 351 397 - -
Pte12g01003 408 ProSiteProfiles Zinc finger RING-type profile. 353 392 IPR001841 -
Pte12g01003 408 CDD mRING-HC-C3HC5_MGRN1-like 351 392 IPR045195 -
Pte12g01003 408 MobiDBLite consensus disorder prediction 58 89 - -
Pte12g01003 408 PANTHER MAHOGUNIN 61 402 IPR045194 GO:0061630
Pte12g01003 408 MobiDBLite consensus disorder prediction 91 108 - -
Pte12g01003 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 402 IPR013083 -
Pte12g01003 408 MobiDBLite consensus disorder prediction 16 31 - -
Pte12g01003 408 SUPERFAMILY RING/U-box 352 398 - -
Pte12g01003 408 MobiDBLite consensus disorder prediction 1 31 - -
Pte12g01003 408 PIRSF SBP1_RNase_bind 36 120 IPR017066 -
Pte12g01003 408 PIRSF SBP1_RNase_bind 333 403 IPR017066 -
Pte12g01003 408 MobiDBLite consensus disorder prediction 45 116 - -
Pte12g01003 408 FunFam probable E3 ubiquitin-protein ligase LOG2 337 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01003 Pte-Chr12 20004215 20009142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01003 102 407 C3H Transcription Factor Family AT3G06140 55.660 3.60e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01003 - - qsa:O6P43_021626 509.605