Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00995 ATGTTTTCACCTAAAGTACGTATTTGGTTTAGATGCCATGTGCTTGTTGGAAAGCATGCATTGGCACAAAGACCAATTGACATGTTCAAGTCATCAAGTGAACTACTACGTGTCCTAACTACTGTTGCTGTGCTGAGTTTAGGAGGCTATGATGACCTCATGGATTGGCCTCAGTCTAACATAAGAGTAAGGAGTTCAACAACAGTGCAGTCCAGATCAATTCAAGAAAACAATGATGAAGAGGTAGAGGGAGTTCAGAGCAAAGTGAGATGGTCTTATGTGAAGGTCAATATGGATGGGGTTACCATTGGCAGGAAAATTTGCATTGTTGATCATGATGGTTACTCAAGTTTAGCAGTTCAACTAGAAGACATGTTTGGCGGACAATCTGCTTTTAGTCCAAGACTGTTTCAGGCAGGGGCAGACTACACATTGTTCTACAAGGATAGAGGGGAAAATTGGAGAGCTGTTGGTGATGTACCATGGAAGGAGTTTGTTGAAAGTGTGCAGCGTCTAAGGATTGCTAGAAAGAATGCAGCTACCGCTTCTCGTTGA 555 0.4252 MFSPKVRIWFRCHVLVGKHALAQRPIDMFKSSSELLRVLTTVAVLSLGGYDDLMDWPQSNIRVRSSTTVQSRSIQENNDEEVEGVQSKVRWSYVKVNMDGVTIGRKICIVDHDGYSSLAVQLEDMFGGQSAFSPRLFQAGADYTLFYKDRGENWRAVGDVPWKEFVESVQRLRIARKNAATASR* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00995 184 Pfam AUX/IAA family 67 180 IPR033389 -
Pte12g00995 184 Gene3D - 85 184 - -
Pte12g00995 184 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 52 180 IPR003311 GO:0005634|GO:0006355
Pte12g00995 184 ProSiteProfiles PB1 domain profile. 91 179 IPR000270 GO:0005515
Pte12g00995 184 SUPERFAMILY CAD & PB1 domains 92 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00995 Pte-Chr12 19236668 19238598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00995 81 177 B3 DNA Binding Superfamily AT1G34310 31.313 1.45e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte12g00995 AUX_IAA 4.9e-23 CL0072