LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte12g00989	ATGAGTAAAAATGAGCAATCTTCTAGCGGTGGTGGTGGTCAAAGTACAAGGGAATCCATTTGCCATGCAGGTGCCGGTGCTGCTGCTGGGGCAATTGCAGCAACATTTGTGTGTCCATTGGACGTGATCAAAACAAGGTTACAAGTTCATGGTATTCCAGATGGTCATAAAGGAAGTGTCATTGTCACAAGCTTGCAGAATATACTACGAACTGACGGTTTGAGGGGGATGTACCGTGGACTTTCACCAACAATACTGGCACTACTTCCTAATTGGGCAGTATATTTCACCGTGTATGAGCGCCTAAAAGACCTACTCCAGTCTCAAGAGGATGGCTGTAGACTCTCAATTAGAGCGAATATGGTGGCTGCAGCAGGAGCAGGGGCTGCGACTGCAATATCGACAAATCCATTGTGGGTTGTTAAGACCAGACTTCAAACCCAGGGAATGAGAGCAGATGTCATTCCTTACAAAAGCATACTTTCTGCTTTGACAAGGATTTGGCGGGAGGAAGGCATACGAGGACTTTATAGTGGCATTCTACCTTCATTGGCTGGAATAAGTCATGTTGCCATTCAATTTCCTGCTTATGAGAACATCAAAGCATATATGGCAAAAAGCGAAAATACTACCATTGATAAGCTAAGTCCTGGGTATGTTGCTGTCGCCTCATCAACTTCTAAAGTGGTTGCATCCTTGATGACTTACCCACATGAGGTGGTGCGTTCCAGACTGCAAGAGCAAGGTCTGACAAGAAATGGACAATTACAGTATGCAGGGGTCATTGACTGCATTAGAAAAGTTTTCCACAAGGAGGGCCTTGCTGGCTTTTACCGTGGTTGTGCCACTAACTTATTACGAACAACCCCATCAGCTGTTATCACTTTCACCAGCTATGAGATGATTCACAGATTCTTGCAGCGGCTTGTACCTGAGGAGAGAAGGCTTGTAGATTGTCCTCTGAGATCAGATGATTCATCCAATCTGAAGCCAGATCATAATGCAAAATCGGAAAGTGGAACGAATTGGCAGCAATCGCCAGATCAAAGCAACAAGAAAGCTCCATCCATCCCTCTTGGGAATAAGGAGCATCTAACAAGACACTAA	1107	0.4499	MSKNEQSSSGGGGQSTRESICHAGAGAAAGAIAATFVCPLDVIKTRLQVHGIPDGHKGSVIVTSLQNILRTDGLRGMYRGLSPTILALLPNWAVYFTVYERLKDLLQSQEDGCRLSIRANMVAAAGAGAATAISTNPLWVVKTRLQTQGMRADVIPYKSILSALTRIWREEGIRGLYSGILPSLAGISHVAIQFPAYENIKAYMAKSENTTIDKLSPGYVAVASSTSKVVASLMTYPHEVVRSRLQEQGLTRNGQLQYAGVIDCIRKVFHKEGLAGFYRGCATNLLRTTPSAVITFTSYEMIHRFLQRLVPEERRLVDCPLRSDDSSNLKPDHNAKSESGTNWQQSPDQSNKKAPSIPLGNKEHLTRH*	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte12g00989	368	Gene3D	Mitochondrial carrier domain	2	108	IPR023395	-
	Pte12g00989	368	Gene3D	Mitochondrial carrier domain	109	309	IPR023395	-
	Pte12g00989	368	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	18	306	-	-
	Pte12g00989	368	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	215	305	IPR018108	-
	Pte12g00989	368	MobiDBLite	consensus disorder prediction	321	368	-	-
	Pte12g00989	368	Pfam	Mitochondrial carrier protein	116	207	IPR018108	-
	Pte12g00989	368	Pfam	Mitochondrial carrier protein	22	108	IPR018108	-
	Pte12g00989	368	Pfam	Mitochondrial carrier protein	218	307	IPR018108	-
	Pte12g00989	368	PRINTS	Mitochondrial carrier protein signature	130	148	IPR002067	GO:0055085
	Pte12g00989	368	PRINTS	Mitochondrial carrier protein signature	224	246	IPR002067	GO:0055085
	Pte12g00989	368	PRINTS	Mitochondrial carrier protein signature	35	49	IPR002067	GO:0055085
	Pte12g00989	368	PRINTS	Mitochondrial carrier protein signature	22	35	IPR002067	GO:0055085
	Pte12g00989	368	PRINTS	Mitochondrial carrier protein signature	80	100	IPR002067	GO:0055085
	Pte12g00989	368	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	115	203	IPR018108	-
	Pte12g00989	368	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	17	105	IPR018108	-
	Pte12g00989	368	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	18	311	IPR044712	GO:0006862\|GO:0055085
	Pte12g00989	368	MobiDBLite	consensus disorder prediction	333	356	-	-
	Pte12g00989	368	SUPERFAMILY	Mitochondrial carrier	18	301	IPR023395	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte12g00989	Pte-Chr12	18538299	18542460	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte12g00989	5	362	Chloroplast and Mitochondria Gene Families	AT1G25380	63.636	8.57e-151	428

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte12g00989	K15115		-	qsa:O6P43_032709	511.146