Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00980 ATGGTAGGAGCACACATTCCATCTCCCTTGAAAGATCAGTTCTTTGTTCACCTAATTCATAATATTCCTTATCTCAAACTATCAGGAAAACTCAGAGATGGGAGGGAGGTTGCTGTCAAGCGATTATATGAACACAGCTACAGAAGAATAAAGCAGTTCATCAATGAAGTTGAAATCCTTACACGATTGCGCCACAAAAATCTTGTCACCCTATATGGGTGCACTTCGCAACGATCCAGAGAACTACTGCTTGTTTATGAGTATATTCCAAATGGTACAGTTGCAGATCATCTTCATGGGGATAGAGCAAAGCCAGGTTCACTTTCATGGCCTTTAAGAATGAGCATTGCCATTGAGACTGCCGCTGCATTGGCTTATCTGCATGCTTCTGACATTGTTCACCGTGACGTGAAGACAAACAACATTCTTCTTGACAACAGTTTCTGTGTCAAGGTAGCAGATTTTGGTCTATCTAGGTTGTTTCCCAATGATGCCACCCATGTCTCCACTGCTCCTCAAGGAACACCTGGTTATGTTGACCCAGAATATCATGAATGCTACCAGCTCACTAGCAAGAGCGATGTGTATAGCTTTGGGGTTGTACTCATTGAGCTGATATCTTCTCTGCCTGCTGTTGACATTGGCAGGCACAGACATGAGATAAATTTGGCAAATTTGGCTGTTAACAAGATTCAGAAACGCGCATACAGCGAATTGATCGATCCATCTATTGGTTCTGAGACTGATGATGATGTTAAGACAATGATAATTACAGTTGCAGAATTGGCTTTTCAATGTTTGCAGTTGGATAGGGACTTGAGGCCTTCAATGGAGGAAGTTTTAGAAGCCTTGAAGAGAACACAAAATGAGAAAGACAAGGCTACAACAATGGATGAGGCAAATGTTCATGCAGAAATATCATCAAATAGTTTGCAGTCAATTCAACCTTCACCAGATTGTGGTGAACTTGGCTCGCGGAAGTGTATAGAGCCAACAAATTCACCAATCACGGTGATGGGCAACTGGGATAGCAACTTAACCACCCCAAATAACAGTTCTTGA 1062 0.4209 MVGAHIPSPLKDQFFVHLIHNIPYLKLSGKLRDGREVAVKRLYEHSYRRIKQFINEVEILTRLRHKNLVTLYGCTSQRSRELLLVYEYIPNGTVADHLHGDRAKPGSLSWPLRMSIAIETAAALAYLHASDIVHRDVKTNNILLDNSFCVKVADFGLSRLFPNDATHVSTAPQGTPGYVDPEYHECYQLTSKSDVYSFGVVLIELISSLPAVDIGRHRHEINLANLAVNKIQKRAYSELIDPSIGSETDDDVKTMIITVAELAFQCLQLDRDLRPSMEEVLEALKRTQNEKDKATTMDEANVHAEISSNSLQSIQPSPDCGELGSRKCIEPTNSPITVMGNWDSNLTTPNNSS* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00980 353 Pfam Protein kinase domain 32 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00980 353 Gene3D Transferase(Phosphotransferase) domain 1 90 303 - -
Pte12g00980 353 ProSiteProfiles Protein kinase domain profile. 1 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00980 353 FunFam Wall-associated receptor kinase-like 20 89 297 - -
Pte12g00980 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Pte12g00980 353 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 28 347 IPR044652 GO:0004672
Pte12g00980 353 Coils Coil 277 297 - -
Pte12g00980 353 SMART serkin_6 16 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00980 353 Gene3D Phosphorylase Kinase; domain 1 27 89 - -
Pte12g00980 353 SUPERFAMILY Protein kinase-like (PK-like) 31 302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00980 Pte-Chr12 18100618 18101679 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00980 29 353 Receptor kinase-like Gene Family AT1G25390 64.438 1.30e-144 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pte12g00980 Pkinase 8.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00980 - - qsa:O6P43_032707 470.314