Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00946 ATGGCAAAACGTTTGATTCCAAGCCTCAACCGTGTCCTCATTGAGAAAATTGTTCCGCCTTCCAAAACAACTACTGGCATTCTTCTTCCTGAGAAATCCAATAAGCTTAATTCAGGGAAAGTGGTGGCTGTAGGATCTGGACTGCGAAACAAAGCTGGAAACTTTATTCCTGTGTCTGTAAAGGAAGGCGATACTGTTCTACTGCCTGAGTATGGCGGTACTCAAGTGAAGCTTGGTGAAAAGGAGTATGTGTTTCTTTTGTTTAATCTGTCTCTCAGTTTTGGGGTTCACTTTTCTTCTACCCACCTCGAATGTTGGCTGTCATAG 327 0.4312 MAKRLIPSLNRVLIEKIVPPSKTTTGILLPEKSNKLNSGKVVAVGSGLRNKAGNFIPVSVKEGDTVLLPEYGGTQVKLGEKEYVFLLFNLSLSFGVHFSSTHLECWLS* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00946 108 CDD cpn10 4 86 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pte12g00946 108 SUPERFAMILY GroES-like 4 86 IPR011032 -
Pte12g00946 108 Pfam Chaperonin 10 Kd subunit 6 86 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pte12g00946 108 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 86 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pte12g00946 108 SMART Cpn10_2 4 87 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pte12g00946 108 FunFam 10 kDa chaperonin, mitochondrial 1 90 - -
Pte12g00946 108 Gene3D GroES chaperonin 1 89 IPR037124 GO:0006457
Pte12g00946 108 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pte12g00946 108 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Pte12g00946 108 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00946 Pte-Chr12 13341384 13342026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00946 10 86 Calmodulin-binding Proteins AT5G20720 35.897 2.86e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00946 K04078 - sind:105156244 150.214