Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00933 ATGTCTCTGCGACCCACTACTCGTACGGAGGTTAGGAAGAAGTCTTACAAGACTGGAGTGGATGGAGATGAGGCTAGAAGGAGGAGGGAGGATAATCTGATCGAAATCAGGAAGAACAAGCGTGAGGATAATCTTCTTAAGAAGAGGAGGGAAGGACTTGTTCTTCAGTCCCAGCAATTCACAGATGCTTCACAAAATGACGCCACAGTGGAGAAGAGGTTGGAAAGTATACCTGCAATGGTGCAAGGAGTATGGTCTGATGATCCTAATGCACAACTGGAAGCAACAACTCAGTTCAGAAAGCTATTATCAATTGAGCGGAGCCCTCCAATCGATGAAGTGATCAAAGCAAATGTTGTTCATCGGTTTGTGGAATTTTTAAGAAGGCATGATCTTCCTCAACTTCAATTTGAAGCTGCATGGGCTCTAACTAATGTCGCCTCGGGCACATCGGAACACACTCAAGTTGTCATTGAACATGGTGCTGTCCCCATGTTTGTTCAGCTTCTTAGCTCTGCAAGTGATGATGTTAGAGAACAGGCTGTGTGGGCATTAGGTAATGTTGCTGGTGATTCCCCAAGTTGCAGGGATCTTGTGCTTGGACATGGCGCACTCTTGCCTCTATTGTCCCAGTTGAACCAACACTCAAAGTTGTCTATGCTGAGAAATGCCACATGGACTTTATCTAACTTCTGTCGAGGCAAGCCACCTGCAAATTTTGAACAGGTGAAACCTGCCTTGCCAATCCTTCGGCAACTCATACACTTGAATGACGAAGAAGTTTTGACGGATGCATGCTGGGCGCTCTCCTATCTTTCAGATGGCCCGAATGAGAAAATTCAGGCTGTCATTGATGCAGGTGTCTGCCATCGGCTTGTGGAATTTCTTGTCCATCCGTCACCTGCTGTTCTTATACCTGCTCTTCGAACTGTCGGAAACATAGTTACTGGTGATGATACTCAAACTCAGTTTGTAATAGACATTGGAGTGCTTCCGTGCCTTTTCCAACTTCTTACACAAAACCATAAGAAAAGCATCAAGAAAGAAGCTTGTTGGACAATTTCAAATGTTACAGCAGGGAATAGAGCTCAGATACAGGCTGTAATTGAGGCTCACATTGTTGCCCCGCTAGTAAACCTTCTTCAGAATGCTGAGTTTGACGTAAAAAAGGAAGCTGCATGGGCTATCTCAAATGCCACCTCTGGAGGATCTCACGAGCAGATTCAATTTCTGGTGAGCCAAGGCTGCATCAAACCGCTATGTGATCTTCTAGTATGTCCTGATGCAAGGATTGTAACAGTTTGTCTCGAGGGGCTTGAGAATATTCTGAAGGTTGGTGAGTCTGACAAGGAGATGGGTTTACACGGTGGTATCAATCTCTATACACAAATGATTGAGGAATGTGAGGGATTGGATAAGATTGAAAATCTGCAGAGCCATGATAACCATGAGATTTACGAGAAGGCTGTGAAGGTTCTAGAGAGATATTGGACTGGGGAAGAGGAAGATCAGAGCCTACAGGGCAGTGGGAATGAGAACCAACAAGAGTTTAGTTTTGGTACAACCCAACCCACATTTCCTCCTGGTGGATTTAAATTTGGATGA 1605 0.4486 MSLRPTTRTEVRKKSYKTGVDGDEARRRREDNLIEIRKNKREDNLLKKRREGLVLQSQQFTDASQNDATVEKRLESIPAMVQGVWSDDPNAQLEATTQFRKLLSIERSPPIDEVIKANVVHRFVEFLRRHDLPQLQFEAAWALTNVASGTSEHTQVVIEHGAVPMFVQLLSSASDDVREQAVWALGNVAGDSPSCRDLVLGHGALLPLLSQLNQHSKLSMLRNATWTLSNFCRGKPPANFEQVKPALPILRQLIHLNDEEVLTDACWALSYLSDGPNEKIQAVIDAGVCHRLVEFLVHPSPAVLIPALRTVGNIVTGDDTQTQFVIDIGVLPCLFQLLTQNHKKSIKKEACWTISNVTAGNRAQIQAVIEAHIVAPLVNLLQNAEFDVKKEAAWAISNATSGGSHEQIQFLVSQGCIKPLCDLLVCPDARIVTVCLEGLENILKVGESDKEMGLHGGINLYTQMIEECEGLDKIENLQSHDNHEIYEKAVKVLERYWTGEEEDQSLQGSGNENQQEFSFGTTQPTFPPGGFKFG* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00933 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Pte12g00933 534 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Pte12g00933 534 Gene3D - 11 50 IPR036975 GO:0006606
Pte12g00933 534 MobiDBLite consensus disorder prediction 7 24 - -
Pte12g00933 534 MobiDBLite consensus disorder prediction 502 525 - -
Pte12g00933 534 Gene3D - 75 498 IPR011989 -
Pte12g00933 534 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 118 161 IPR000225 GO:0005515
Pte12g00933 534 PIRSF Importin_alpha 2 533 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pte12g00933 534 SMART arm_5 107 148 IPR000225 GO:0005515
Pte12g00933 534 SMART arm_5 192 233 IPR000225 GO:0005515
Pte12g00933 534 SMART arm_5 404 444 IPR000225 GO:0005515
Pte12g00933 534 SMART arm_5 318 359 IPR000225 GO:0005515
Pte12g00933 534 SMART arm_5 361 401 IPR000225 GO:0005515
Pte12g00933 534 SMART arm_5 276 316 IPR000225 GO:0005515
Pte12g00933 534 SMART arm_5 150 190 IPR000225 GO:0005515
Pte12g00933 534 SMART arm_5 235 274 IPR000225 GO:0005515
Pte12g00933 534 MobiDBLite consensus disorder prediction 1 24 - -
Pte12g00933 534 Pfam Armadillo/beta-catenin-like repeat 405 442 IPR000225 GO:0005515
Pte12g00933 534 Pfam Armadillo/beta-catenin-like repeat 321 358 IPR000225 GO:0005515
Pte12g00933 534 Pfam Armadillo/beta-catenin-like repeat 277 315 IPR000225 GO:0005515
Pte12g00933 534 Pfam Armadillo/beta-catenin-like repeat 246 273 IPR000225 GO:0005515
Pte12g00933 534 Pfam Armadillo/beta-catenin-like repeat 192 233 IPR000225 GO:0005515
Pte12g00933 534 Pfam Armadillo/beta-catenin-like repeat 108 148 IPR000225 GO:0005515
Pte12g00933 534 Pfam Armadillo/beta-catenin-like repeat 362 400 IPR000225 GO:0005515
Pte12g00933 534 Pfam Armadillo/beta-catenin-like repeat 150 189 IPR000225 GO:0005515
Pte12g00933 534 MobiDBLite consensus disorder prediction 501 534 - -
Pte12g00933 534 SUPERFAMILY ARM repeat 13 501 IPR016024 -
Pte12g00933 534 FunFam Importin subunit alpha 75 498 - -
Pte12g00933 534 Pfam Atypical Arm repeat 459 505 IPR032413 -
Pte12g00933 534 PANTHER IMPORTIN ALPHA 12 503 - -
Pte12g00933 534 FunFam Importin subunit alpha 11 50 - -
Pte12g00933 534 Pfam Importin beta binding domain 12 97 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00933 Pte-Chr12 12669424 12674700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00933 285 466 U-box Gene Family AT2G23140 25.824 6.03e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00933 K15042 - rcu:8269839 905.59