Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00930 ATGAAAAAGAAGTCAGGCAGGGGTAAACCCAGCCCCTCTCATGCCCACAAACCGAAGAAGTCAACCCTCAGTTCTATTCCTTTGCTGGTTAATCAAGAGGAAGGAGATGGTGCTAGTAATGATCAAAGAGGAAACATTGTGCCAGAGTCCTCAGCTGGAGAAGGCCATGAATTGGCTTCCATTACGGAAGCTTTGTTGAATGACAAAAACGGTGCTGTAAGAGAATGCAACAGAAAGCATGAGGAAACTCATGACGATGATTGTGAGTTTCAGGTGATATGCACAGAATGTGGTAAAGGTGGGAGTGTTTTAGTTTGTAGTGAAAAACATTGTCCTGCTGCTCTTCATGAGAAATGTATTGGTTCTGAACCAATATTTGATAGTACGGGAAAATTTTACTGTCCCTATTGCTGGTACAAACTGGCGTTAGCTGAGACTGAGGAACTACGGAAAAAAGCTACTTTGGCGAAGATCGCTCTGTCAAAGTTTCTGGGTCAGAAACCTGTTGCTGAAGCTGAAGTGAAACAGAGAGATAGCATTTCTGAAATTCAAAAGCAAAATGTGTCAATGCAAAAAGCAACTACAGATTGCACAGATCATGACATTCAGCATGTCGGTAAGAGAGTCCAAGATGATTCAATGAATCTAGGTGTAGATAAACAAAGTGTATCAGAGGATGACAAATGCACTGTGGGAACTGAAGAACAGATGCATCAAAGGACATCAATGGTAGTTGAAGATACATGCACAGATCATGACATTCAGCATGTGGGTAAGAGAGTTCAAGATGATTCAATGAATCTAGGTGTAGATCAAAGAAATGTATCAGAGGATGACAAATGCACTGTGGGAACTGAAGAACGGATACATCAAAGGACATCAATGGTACTTGAAGATACATGCACAGATCATGACATTCAGCATGTCGGTAAGAGAGTCCAAGATGATTCAATGAATCTAGGTGTAGATAAACGAAGTGTATCAGAGGATGACAAATGCACTTTGGGAACTGAAGAACAGATGCATCAAAGGACATCAATGGTACTTGAAGATACATGCACAGATCATGACATTCAGCATGTGGGTAAGAGAGTCCAAGATGATTCAATGAATCTAGGTGTAGATCAAAGAAATGTATCAGAGGATGACAAATGCACTGTGGGAACTGAAGAACGGATAGATCAAAGGACATCAATGGTACTTGAAGATACCAAGGATGCACCTATTGATTTTGATGCTGAGGGTGTCCTACTAAGAAGGAGGCCACGTAAAAACAAAGTTCAAGAGGAAACTCTCTTTTCTGAAAAAAAAATGAGTTTTCTTGGTGCAAGGAAAAGATTACTTTGGACAGATGAAGAGGAAAACATGTTGAGGGAAGGAGTTGCGAGATTCACAACAGAGAACCAGAGAATACCTTGGAGAAAAATATTAGAATTTGGTCGTCATGTCTTTGACAATACTCGTACTCCTGTAGATCTCAAGGATAAGTGGAGGAACCTCTCCAAATAA 1509 0.4056 MKKKSGRGKPSPSHAHKPKKSTLSSIPLLVNQEEGDGASNDQRGNIVPESSAGEGHELASITEALLNDKNGAVRECNRKHEETHDDDCEFQVICTECGKGGSVLVCSEKHCPAALHEKCIGSEPIFDSTGKFYCPYCWYKLALAETEELRKKATLAKIALSKFLGQKPVAEAEVKQRDSISEIQKQNVSMQKATTDCTDHDIQHVGKRVQDDSMNLGVDKQSVSEDDKCTVGTEEQMHQRTSMVVEDTCTDHDIQHVGKRVQDDSMNLGVDQRNVSEDDKCTVGTEERIHQRTSMVLEDTCTDHDIQHVGKRVQDDSMNLGVDKRSVSEDDKCTLGTEEQMHQRTSMVLEDTCTDHDIQHVGKRVQDDSMNLGVDQRNVSEDDKCTVGTEERIDQRTSMVLEDTKDAPIDFDAEGVLLRRRPRKNKVQEETLFSEKKMSFLGARKRLLWTDEEENMLREGVARFTTENQRIPWRKILEFGRHVFDNTRTPVDLKDKWRNLSK* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00930 502 CDD SANT_TRF 449 502 - -
Pte12g00930 502 ProSitePatterns Zinc finger PHD-type signature. 94 137 IPR019786 -
Pte12g00930 502 Pfam Myb-like DNA-binding domain 449 500 IPR001005 -
Pte12g00930 502 MobiDBLite consensus disorder prediction 1 54 - -
Pte12g00930 502 SMART PHD_3 93 138 IPR001965 -
Pte12g00930 502 Coils Coil 497 502 - -
Pte12g00930 502 MobiDBLite consensus disorder prediction 17 47 - -
Pte12g00930 502 SUPERFAMILY Homeodomain-like 444 501 IPR009057 -
Pte12g00930 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 257 IPR013083 -
Pte12g00930 502 MobiDBLite consensus disorder prediction 1 16 - -
Pte12g00930 502 Gene3D - 442 502 - -
Pte12g00930 502 SUPERFAMILY FYVE/PHD zinc finger 86 142 IPR011011 -
Pte12g00930 502 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 444 502 IPR017930 -
Pte12g00930 502 ProSiteProfiles Myb-like domain profile. 449 501 IPR001005 -
Pte12g00930 502 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 65 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00930 Pte-Chr12 12648503 12651192 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte12g00930 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00930 - - qsa:O6P43_003814 219.164