Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00924 ATGCTATTGAGAAGGTGGCCTCTATATCTTATGACACTAACGTTCTCCGCACCAGAGGTCCAAGGAGAATGTGGTGCATCATGCACACTATCTCTGCACATGCAAATCAAGAAGGGGGCAACTCCCACTGAACGTAATCGTTGGGATAGTGAGGTTTCGTCCATGGCCATTTTAGATGAAAATAAAGCTGAGAGGTGCTGTAGAAGTATTGACACGCAACCTCTGTTTTTGAAAAATAAATCTCCAAGATGGCACGAGCAGCTGCAACGCTGGTGCGTAAATTTCAAAGGACGCATCACAGTAGCCTCTCTGAAAATTTCCAGCTTGCAGCTGCGGTAG 339 0.4602 MLLRRWPLYLMTLTFSAPEVQGECGASCTLSLHMQIKKGATPTERNRWDSEVSSMAILDENKAERCCRSIDTQPLFLKNKSPRWHEQLQRWCVNFKGRITVASLKISSLQLR* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00924 112 PANTHER TUBBY-RELATED 46 105 - -
Pte12g00924 112 Gene3D Tubby Protein; Chain A 15 111 IPR025659 -
Pte12g00924 112 Pfam Tub family 47 105 IPR000007 -
Pte12g00924 112 PRINTS Tubby superfamily signature 77 94 IPR000007 -
Pte12g00924 112 PRINTS Tubby superfamily signature 95 111 IPR000007 -
Pte12g00924 112 SUPERFAMILY Tubby C-terminal domain-like 71 105 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00924 Pte-Chr12 12626341 12628796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00924 69 105 TUB Transcription Factor Family AT2G18280 78.378 7.73e-15 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte12g00924 Tub 4.6e-14 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00924 K19600 - zju:107420271 71.2478