Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00896 ATGGCGTACCAGCCACTTCAGGGTCCGAGTTCGCGATCCAGCTCCACTAGCTCTGGTTTTCAATTCGGGAATTCTCCATTCGGGGATACAACTTATACCAAAGTCTTCGTCGGGGGTTTGGCTTGGGAGACTCAGAGCGATACCATGCGCCGCTACTTCGAACAGTTTGGCGACATTCTTGAGGCCGTTGTCATCACAGATAAGAACACAGGCCGATCCAAGGGCTACGGTTTTGTCACTTTTCGGGAACCCGAAGCTGCTAGGAGAGCTTGTGGTGATGCAACCCCAATTATTGACGGTAGGCGAGCTAACTGTAATCTGGCCTCACTCGGCCGACCGCGCCAGCCTCTACCCTATGGACGTTTGAGGCCGGCCTCCCCCCACATTGGTAGTTTCCAACCTGCCAGAAGTGCTTATGCTGGCAGTTTTGGCTATCAACAACCACTTTCGTACTGTTATAATCAAGGATTGATCTATCCTCCTTATGGGTATACAACATATGGACCTGAATACGTCTACCCGCAGGGTCTATACAGTCCATATATGAGTCACCAGTATCTTCAGATGTGTGGGATGCCTGGTTCAGTTAATATGACAATGTATCCATATGGGCAGATTGGCCCAGCTGTTCCAGTCAGTCATGGTTATTCAACAATGCAAGGTTATACGTTGCCTAGTCATCAGATGGTGCCATTTCGTACACCTGGTGTTAGCACAATTTCAACTTCTGACATGCCTACTATTCAAGCATCATATCCCAGTGGTATTGCTACACCTGTCCAAGCACAACCACAATTCACTGCTTCTTCTCAATACCTGCAAGGTAGTGGCTCTGACCAAACAGTTGGGTGA 852 0.4883 MAYQPLQGPSSRSSSTSSGFQFGNSPFGDTTYTKVFVGGLAWETQSDTMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFREPEAARRACGDATPIIDGRRANCNLASLGRPRQPLPYGRLRPASPHIGSFQPARSAYAGSFGYQQPLSYCYNQGLIYPPYGYTTYGPEYVYPQGLYSPYMSHQYLQMCGMPGSVNMTMYPYGQIGPAVPVSHGYSTMQGYTLPSHQMVPFRTPGVSTISTSDMPTIQASYPSGIATPVQAQPQFTASSQYLQGSGSDQTVG* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00896 283 SMART rrm1_1 34 106 IPR000504 GO:0003723
Pte12g00896 283 Gene3D - 4 118 IPR012677 -
Pte12g00896 283 PANTHER BOULE-RELATED 11 260 - -
Pte12g00896 283 CDD RRM_RBM24_RBM38_like 33 108 - -
Pte12g00896 283 MobiDBLite consensus disorder prediction 1 22 - -
Pte12g00896 283 SUPERFAMILY RNA-binding domain, RBD 9 121 IPR035979 GO:0003676
Pte12g00896 283 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 27 114 - -
Pte12g00896 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 110 IPR000504 GO:0003723
Pte12g00896 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00896 Pte-Chr12 12039024 12041827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00896 29 109 C2H2 Transcription Factor Family AT2G19380 40.741 3.04e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00896 - - gmx:100779244 436.417