Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00881 ATGAACGACTTGAAAGAACTGTGGTCCCTTTTGAATTTACTTCTTCCAGAAGTGTTTGATAATAGGAAAGCATTTCATGATTGGTTCTCACAGCCATTTCAAAAGGAAGGTCCTTCACAAAATCCAGAGGATGATTGGCTTGAGACGGAGAAAAAGGTCATAATTATCCACAGACTGCATCAAATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCCTTACCACCAAAGGTGTCCATTGTATTGAAATGTCGAATGTCAGCAATTCAAAGTGCTATTTATGACTGGATCAAATCTACTGGCACTCTTAGACTTGATCCTGAGGATGAGAAACGTAGGGTTCAAAAGAATCCTGTCTACCAAGTTAAGCAGTACAAGACTTTAAATAACAGGTGTATGGAGCTACGGAAAACTTGCAATCACCCTTTGCTTAACTATCCATATTTCAATGATTTGTCAAAGGACTTCCTTGTAAAATCTTGTGGGAAACTGTGGATCTTGGATCGGATTCTCATAAAACTGGAGAGAACTGGACACAGGGTGTTGCTATTCAGTACCATGACAAAGCTCCTAGATATCTTAGAAGAATACCTGCAATGGAGACGACTTGTTTATAGACGAATTGATGGAACAACTAGTTTAGAAGATCGTGAATCAGCTATAGTTGATTTTAACGACCCTAACACAGACTGCTTCATCTTCTTACTTAGTATTCGAGCTGCAGGGAGAGGCCTTAATCTTCAAACGGCTGACACAGTTATCATTTATGATCCTGATCCAAATCCGAAAAATGAGGAACAGGCAGTTGCTAGAGCTCACCGTATTGGTCAAAAGAGAGAAGTCAAAGTTATTTACATGGAAGCAGTTGTTGATAAAATCTCTAGTCATCAGAGAGAGGACGAGTTAAGAAGTAGTGGAACTGTTGACTCAGAGGATGACCTTGCAGGAAAAGATCGATATATAGGTTCCATTGAGAGTCTAATAAGGAACAACATTCAACAATATAAGATTGATATGGCTGATGAGGTTATCAATGCTGGGCGTTTTGACCAAAGAACAACACATGAAGAGAGACGAATGACCTTGGAAACATTATTACATGATGAAGAGAGGTATCAAGAAACAGTCCATGATGTTCCCTCGCTGCAGCAAGTAAATCGCATGATTGCCAGGAGTGATGATGAAGTTGAGTTGTTTGATCAGATGGATGAAGAAATGGATTGGGATGAGGAGATGACAAGGTATGATCAGGTTCCAAAGTGGCTTCGGGCGAGTACAAGAGAAGTCAATGCTGCTGTTGCTGCGTTATCTAAAAGACCATCAAAGAACATATTAGGTGGTGGCTTTGGCATTCAGTCTGGTGAAGTGGGTTCTGACATGTCTCCAAGAACTGAAAGGAGAAGGGGACGGCCCAAAGGAAAGAAGAATCCTAACTACAAAGAATTGGAAGATGAGAATGAGGAATACTCTGAAGCAAGTTCTGAAGAGAGAAACGGATATTCTGCTCATGAGGAAGAGGGAGAAATAGGGGACTTTGAAGATGACGTGTTTAGTGCTGCAGCTGGATCACAACCTGCTGGTAAAGCTCAAATAGAAGAAGATGGTCCGCTTTGTGATGTTGGCTATGACTGTTCCCGAGCTCCAGAAAATGCAAAAAAATAA 1677 0.4103 MNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPSQNPEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCRMSAIQSAIYDWIKSTGTLRLDPEDEKRRVQKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPYFNDLSKDFLVKSCGKLWILDRILIKLERTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPNTDCFIFLLSIRAAGRGLNLQTADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQREDELRSSGTVDSEDDLAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQQVNRMIARSDDEVELFDQMDEEMDWDEEMTRYDQVPKWLRASTREVNAAVAALSKRPSKNILGGGFGIQSGEVGSDMSPRTERRRGRPKGKKNPNYKELEDENEEYSEASSEERNGYSAHEEEGEIGDFEDDVFSAAAGSQPAGKAQIEEDGPLCDVGYDCSRAPENAKK* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00881 558 Gene3D - 1 71 IPR038718 -
Pte12g00881 558 FunFam ATP-dependent helicase BRM 80 290 - -
Pte12g00881 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 411 IPR027417 -
Pte12g00881 558 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 171 348 IPR001650 -
Pte12g00881 558 MobiDBLite consensus disorder prediction 448 558 - -
Pte12g00881 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 70 IPR027417 -
Pte12g00881 558 SMART helicmild6 197 281 IPR001650 -
Pte12g00881 558 Pfam SNF2-related domain 2 147 IPR000330 GO:0005524|GO:0140658
Pte12g00881 558 PANTHER SNF2/RAD54 HELICASE FAMILY 2 495 - -
Pte12g00881 558 MobiDBLite consensus disorder prediction 497 511 - -
Pte12g00881 558 Coils Coil 484 504 - -
Pte12g00881 558 Gene3D - 76 318 IPR027417 -
Pte12g00881 558 CDD SF2_C_SNF 166 291 - -
Pte12g00881 558 Pfam Helicase conserved C-terminal domain 169 281 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00881 Pte-Chr12 11170661 11172475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00881 183 304 RAD5 or RAD16-like Gene Family AT1G11100 40.000 2.83e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte12g00881 SNF2_N 8.8e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00881 K11647 - zju:107404055 961.059