Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00840 ATGGCGACGTTTGCTAAACCAGAGAATGCGTTGAAACGAGCTGAAGAATTAATAAATGTTGGACAGAAGCAAGACGCTCTTCAAACCCTTCACGACCTCATCACTTCCAAAAGATATAGAGCGTGGCAAAAGACCCTTGAGAGAATTATGTTCAAATATGTGGAGCTTTGTGTCGAGATGAGGAGAGGTCGTTTTGCCAAGGATGGTCTCATTCAGTATCGAATCACTTGTCAACAAGTGAATGTTAGTTCATTAGAAGAGGTGATCAAGCATTTTATGCATTTAGCAACAGAAAAAGCTGAACAAGCTCGTAGTCAGGCACAGGCCTTAGAAGAAGCTCTTGATGTTGATGATCTGGAAGCTGATAAAAGGCCAGAGGACTTAATGGTGAGTTATGTTAGTGGCGAGAAAGGAAAGGATAGATCTGATAGGGAGCTTGTTACCCCATGGTTTAAGTTCCTATGGGAAACATACAGGACTGTGCTTGAGATCTTACGAAACAACTCAAAGCTGGAAGCTTTATATGCTATGACAGCTCACCGCGCTTTCCAGTTTTGCAAGCAGTATAAGCGAACAACAGAGTTTCGCAGGCTTTGTGAAATAATAAGGAACCATCTGGCTAATCTTAATAAGTATCGAGACCAAAGGGACCGACCTGATCTTACTGCTCCTGATAGCTTGCAACTCTATCTTGATACAAGATTTGAGCAGCTTAAAGTTGCTACAGAACTTCAAATGTGGCAGGAAGCTTTCCGATCTATTGAAGATATTTATGGACTGATGTGCTTGGTCAAGAAGACTCTCAAGCCATCTCTGATGGTTCTTTACTATGCTAAGCTGACAGAAATATTTTGGATATCTAGAAGCTATCTGTATCATGCATATGCTTGGTTCAGGCTCTTCTTGCTGCAGAAAAGTTTTAATAAAAACCTTACCCAGAAGGATTTGCAGTTAATAGCATCGTCAGTTGTTTTGGCTGCACTTTCTGTTTCTCCCTATGATCTTTCTCACGGGGCATCTAATTTGGAGCTTGAGCATGAAAAAGAGAGAAACACAAAGATGGCTAATCTTATGGGATTTAATCTCGAAGCTAAACCTGAGAGCAGAGAAGTGCTCTCGAGGTCAGCTCTTCTTTCGGAATTGGTTTCAAAAGGTGTAATGTCTTGTGCTGCTCAGGAAGTTAAAGATATCTACCATCTTTTAGAACATGAGTTTGTCCCACTTGATCTTGCAGCAAAAGTTCATCCCTTACTGACGAAAACTTCTAAGTTTGGGGGTAAGATATCTTCAGCTGCTTCTGTACCAGATGTCCAATTGTCCCAGTACATTCCGGCCCTTGAGAAACTTGGAACTTTGAGGTTGCTGCAGCAGGTTTCCAAAATTTACCTTAAGATGAAGATTGAGACTCTTTCTGGCATGATTCCATTTTTTGATATTGCTGATGTTGAGAAGATTACTGTAGATGCTGTCAAACATAATTTTGTGCAGTTGAAAGTTGACCATGCAAGGAATTGTGTTGTCTTCTGTGAGAGGAGTCTTGAATCGGATGGCTTATTTGATCAACTGGCAAATCTGGCTCAAGAGTTTAGTGCTGCAAGATCAATGATCTATCCTCCTGTTAAAAAAGCATCAAAAAGTGGTGATATGCTTCCCAATTTGCATGAAACTTTGGAGAAAGAGCACAGAAAACTTCTAGCTCGGAAGTCAGTAATTGAGAAGCGTAAGGAGGATCAAGAAAGGCAACTTCTAGAAATGGAACGTGAGGAGGAAACGAAGAGGTTGAGACTGCGCAAGATAACTGAAGAAGCAGAGCAAAAGCGACTTGCCACTGAGTATGAGCAGCGGAAGAACCAAAGGATTCTCAGAGAAATACAGGAGAAAGAACTGGAAGAAACCCAGGCTGTTTTGGAAGAGCTCAAAAAGAAGGGGAAGAAGCCAGTGATAGAAGGGGATAAGCTGACCAGAGAAACATTGAGGGAATTGGCCTTGAGCGAGCAACTTCGGGAAAAGCAGGAAATGGAAAAGAAAATGCAAAAACTTGCCAAGACAATGGATTATTTGGAGAGAGCAAAAAGAGAGGAGTCCGTTCCTCTGATTGAAGCTGCATATCAACAGCGGTTAGTGGAAGAGAGAAAATTGCATGAGCATGAGCTACAACTAGAGACTGCACTCAGTAAGCAGCGTCATGAGGGAGACTTGAAGGAGAAGGAGAGGCTGGCTCGAATGAAGGACAATAAAGAGATTTTTCAAGAGAGAGTTGTCAGTCAACGCCAATCAGAACTTGACAGATTAAGGGAGGAAAGAGAAGAGCGAATCTCTAGCATTTTACGTTCCAGGAAACTGGAAAGGGAGAAGATGAGAAAATACAAATATTATTTGATGTTGGAAGAAGAGAGGCAAAAGAAATTGCGGGAGGAGGAGGAAGCTCGAAAGCACGAGGAGGCTGAGAGGCGCAGAAGGGAAGAGGCAGAGCGTAAAGCAAAATTGGATGAGATTGCTGAGAAACAGAGGCAAAGGGAGAGAGAACTGGAGGAAAAAGAGAGGCTCAGGAAAGAGGCATTGCTTAAATCTACTACTGAAGCACCAGCAAGGCCCACTGAACCTGCCACTGCTCCAGCAATAGCAGCTGCAGCTCGGCCATTGGAGTCAGGATCTGCTGCTGCACCGGCCCCTGGGAAATATGTTCCTAGGTACCGGCGCTCTGAAACTGCTAGCCAGACTCCTCCAGAAACTGATCGATGGGGTAGCAGCAGTGGAAGGCAAGATGATAGAATGCCCCCAGCTGCTGATCGGTGGCGCAGTGATGATCGGAGACCCGCATTTGGTGGTTCAAGGTCATCTTCAACATGGTCATCATCCAGGAATCCACCTCGGGGATCTGATCGCTGA 2889 0.4372 MATFAKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVEMRRGRFAKDGLIQYRITCQQVNVSSLEEVIKHFMHLATEKAEQARSQAQALEEALDVDDLEADKRPEDLMVSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLTAPDSLQLYLDTRFEQLKVATELQMWQEAFRSIEDIYGLMCLVKKTLKPSLMVLYYAKLTEIFWISRSYLYHAYAWFRLFLLQKSFNKNLTQKDLQLIASSVVLAALSVSPYDLSHGASNLELEHEKERNTKMANLMGFNLEAKPESREVLSRSALLSELVSKGVMSCAAQEVKDIYHLLEHEFVPLDLAAKVHPLLTKTSKFGGKISSAASVPDVQLSQYIPALEKLGTLRLLQQVSKIYLKMKIETLSGMIPFFDIADVEKITVDAVKHNFVQLKVDHARNCVVFCERSLESDGLFDQLANLAQEFSAARSMIYPPVKKASKSGDMLPNLHETLEKEHRKLLARKSVIEKRKEDQERQLLEMEREEETKRLRLRKITEEAEQKRLATEYEQRKNQRILREIQEKELEETQAVLEELKKKGKKPVIEGDKLTRETLRELALSEQLREKQEMEKKMQKLAKTMDYLERAKREESVPLIEAAYQQRLVEERKLHEHELQLETALSKQRHEGDLKEKERLARMKDNKEIFQERVVSQRQSELDRLREEREERISSILRSRKLEREKMRKYKYYLMLEEERQKKLREEEEARKHEEAERRRREEAERKAKLDEIAEKQRQRERELEEKERLRKEALLKSTTEAPARPTEPATAPAIAAAARPLESGSAAAPAPGKYVPRYRRSETASQTPPETDRWGSSSGRQDDRMPPAADRWRSDDRRPAFGGSRSSSTWSSSRNPPRGSDR* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00840 962 FunFam Eukaryotic translation initiation factor 3 subunit A 217 270 - -
Pte12g00840 962 Gene3D - 352 493 - -
Pte12g00840 962 Gene3D - 269 342 - -
Pte12g00840 962 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Pte12g00840 962 Gene3D UVR domain 217 268 - -
Pte12g00840 962 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 932 IPR027512 GO:0005852
Pte12g00840 962 MobiDBLite consensus disorder prediction 900 915 - -
Pte12g00840 962 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Pte12g00840 962 Coils Coil 554 602 - -
Pte12g00840 962 MobiDBLite consensus disorder prediction 941 962 - -
Pte12g00840 962 Coils Coil 795 856 - -
Pte12g00840 962 MobiDBLite consensus disorder prediction 801 962 - -
Pte12g00840 962 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 954 IPR027512 GO:0005852
Pte12g00840 962 Coils Coil 622 642 - -
Pte12g00840 962 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Pte12g00840 962 Pfam PCI domain 373 508 IPR000717 -
Pte12g00840 962 MobiDBLite consensus disorder prediction 801 857 - -
Pte12g00840 962 Coils Coil 93 120 - -
Pte12g00840 962 Coils Coil 663 693 - -
Pte12g00840 962 MobiDBLite consensus disorder prediction 916 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00840 Pte-Chr12 9701763 9708753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00840 1 961 Eukaryotic Initiation Factors Gene Family AT4G11420 68.934 0.0 1278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00840 K03254 - gmx:100803796 1293.87