Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00824 ATGCGTACCAAGTCGCGAACAGCTGTGAAACTTAACAAGGAAGCCCATAAACACTCAATTTCCAGTACTAGTAAATCGGAGGGAGCTGAGTTTTTGCCATTGGAAGGAGGTCCAGGTGGCAAACTAGAAGTACAGAATCTGTTGGAAGATAATGCTACAGTCTTATACGTTGGTCGAATTCCAGATGGCTTCACTGAGGAAGGGATGAGAGATTTTTTTAAAGAATTCGGTACTGTCAAGAGATTAAGAATTTCAAGAAGCAGAAAGACGGGAAAATCAAAGCATTATGGTTTCGTAGAATTTGAATCTCCCATGGTGGCAAAAATTGTTGCTGAAACCATGAACAATCATCTTGTGGAAAATCACCTGCTGCAGGTCCACCCAATTCCTACTGAGCGTGTTCATCCAAACTTGTGGAAAGCATTTAGCTTTCGTTCCAATCCACTGGACTGGCTTCAACTTGAAAGACAACGACACAACAAGGAAAGAACCTTGGACGAGCACCAAAAATTAGTTGAGAGGATCAAGAAACGTGATCAAAGCCGAAGGAAACAGATAGAGGCCGTTGGCCTTGATTACAAGTGCCCTGAAATTGTGGGTGATGTCCTGCATGGTCCAAAGAAAATCAAGTTTGAAGACGATTAG 645 0.4248 MRTKSRTAVKLNKEAHKHSISSTSKSEGAEFLPLEGGPGGKLEVQNLLEDNATVLYVGRIPDGFTEEGMRDFFKEFGTVKRLRISRSRKTGKSKHYGFVEFESPMVAKIVAETMNNHLVENHLLQVHPIPTERVHPNLWKAFSFRSNPLDWLQLERQRHNKERTLDEHQKLVERIKKRDQSRRKQIEAVGLDYKCPEIVGDVLHGPKKIKFEDD* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00824 214 CDD RRM_NIFK_like 54 127 - -
Pte12g00824 214 SMART rrm1_1 54 127 IPR000504 GO:0003723
Pte12g00824 214 MobiDBLite consensus disorder prediction 7 23 - -
Pte12g00824 214 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 12 212 - -
Pte12g00824 214 Gene3D - 2 135 IPR012677 -
Pte12g00824 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Pte12g00824 214 MobiDBLite consensus disorder prediction 1 30 - -
Pte12g00824 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Pte12g00824 214 Coils Coil 154 178 - -
Pte12g00824 214 SUPERFAMILY RNA-binding domain, RBD 46 133 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00824 Pte-Chr12 9519699 9525545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00824 55 136 Eukaryotic Initiation Factors Gene Family AT2G36660 30.952 7.52e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00824 K14838 - csv:101206517 258.84