Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00748 ATGGCGATGGCTCTGGCTCTGACTCAGCACAGAGAGAGTAGTGGTGGAAGTATCAACAACCATCTCGACAACGGCAAGTATGTCCGATACACGGCTGAGCAGGTTGAAGCTCTTGAAAGAGTTTATGTCGAGTGTCCCAAACCGAGCTCGTTGCGGAGGCAACAATTGATTCGAGAATGTCCCATTCTCTCCAACATTGAGCCCAAGCAGATAAAAGTTTGGTTTCAGAACCGCAGGTGTAGAGAGAAGCAGCGGAAAGAGGCTTCCCGGCTTCAGACTGTGAACAGAAAACTGAGTGCCATGAACAAATTGTTGATGGAGGAGAACGATCGCTTACAGAAACAAGTCTCGCAACTAGTCTGTGAGAATGGTTATATGCGGCAGCAGTTGCAAACGACACCAGCTGGTACTACCGGTGCAAGTTCTGATTCCGTGGTCACCACTCCTCAGCATTCATTGAGAGATGCTACCAACCCTGCTGGACTACTCTCGATAGCTGAGGAGACCTTGGCGGAGTTCCTTTCAAAGGCTACTGGAACTGCTGTCAATTGGCTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCAGTTGGGATTTTTGCTATTTCACAAAGATGCAGTGGAGTGGCAGCTCGAGCCTGCGGTCTAGTAAGTTTAGAACCTACAAAGATAGCAGAGATCCTAAAAGATCGTCCATCTTGGTTCCGGGACTGTCGGAGCCTTGAAATTTTCACAATGTTCCCTGCTGGGAATGGAGGGACAATTGAACTTATTTATACACAAACGTATTCTCCAACTACTTTGGCTACTGCTCGGGATTTCTGGACACTAAGATATACTACAACATTAGACAATGGCAGCCTGGTGGTTTGTGAGAGATCACTGTCTGGTTCTGGTGCCGGGCCAAGTGGAACTTCTGCTGCGCAGTTTGTTAGAGCTGAAATGCTTCCTAGTGGTTATTTAATTCGTCCATGTGAGGGTGGAGGATCAATTATCCACATTGTTGACCACTTGAATCTTGAGGCCTGGAGTGTGCCAGAGGTACTGCGACCACTTTATGAATCTTCTAAAGTGGTAGCTCAGAGGATGACTATTGCAGCATTGCGCTATATAAGACAAATAGCACAAGAAACAAGTGGTGAGGTTGTATACGGTTTGGGTAGACAGCCAGCTGTTCTGCGAACATTTAGCCAAAGATTGAGCAGAGGCTTTAATGATGCAGTGAATGGATTCACTGATGATGGTTGGTCTGTGCTAAGTTGTGACGGTGCTGAAGATGTGATTATTGCTGTTAATTCCATAAAAAATTTGAGCACTATAACTAACCAAGCAAATTCCCTTGCCTCTCTTGGAGGTATTCTATGCGCTAAGGCTTCAATGCTGCTGCAAAATGTTCCACCTGCTGTTTTAGTACGTTTCCTTAGGGAGCACCGATCAGAGTGGGCTGATTTTAATGTAGATGCGTATTCTGCTGCATCATTGAAAGCTAGTCCTTACGCTTATCCAGGAATGAGGCCAACAAGATTCACTGGAAGTCAAATTATCATGCCTCTTGGCCATACTATAGAACATGAGGAGATGCTTGAAGTTATTCGGTTGGAAGGCCACACTCTTGCTCAAGATGATGCCTTTGTATCAAAGGATATCCACCTCTTGCAGATATGTAGTGGCGTGGATGAGACTGCAGTGGGTGCCTGCTCTGAACTTATTTTTGCTCCTATTAATGAGATGTTTCCTGATGATGCTCCATTGGTTCCTTCAGGTTTCCGCATTATACCGTTGGATTCAAGATCAGGTGATTCAAAAGATTCCTCATCTAACCTAACACTGGACCTGGCATCTGGCCTCGAAGTGACAGCAAACAATGTGGCAGCTGATGCATCATTAAGTCATAATAGTCGATCAGTGCTGACAATTGCTTTCCAATTCCCTTTTGACAGTAGTCTACGAGATAATGTTGCGATCATGGCACGTCAGTATGTTCGTAGTGTGATTTCCTCCGTTCAAGGGGTTGCCATGGCCATATCACACTCTGGTATTAGCCCAGCTGCTGGTACTAGGCTATCTCCAGCGTCCCCAGAGGCCATTACGTTAGCCAACTGGATTAGCCAGAGCTACAGTTTCTACATAGGGAGAGAATTGCTGAGATGTGATTCTGTAGGAAGTGATTCAGTTTTGAAACGATTATGGCATCATCAGGATGCGATCTTGTGTTGTTCAGTGAAGTCTCTACCAGTATTCATGTTCGCTAACCAAGCGGGGTTTGACATGCTGGAAACAAGTATAGTCGCTCTTCAAGACATCACTTTAGACAAGATATTTGATGAGTCCGGACGGAAGGCATTGTGTGCGGAATTTACCAAATTGATGCAGCAGGGTTTTGCTTATTTGCCTGCTGGGATATGCATGTCTACTATGGGACGCCATGTCTCGTACGAACAAGCCATTGCCTGGAAAGTCTTGGCTGCCGACGAGAGCATTGTTCATTGCTTGGCTTTTTCTTTCATAAATTGGTCGTTTGTATGA 2526 0.4572 MAMALALTQHRESSGGSINNHLDNGKYVRYTAEQVEALERVYVECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLVCENGYMRQQLQTTPAGTTGASSDSVVTTPQHSLRDATNPAGLLSIAEETLAEFLSKATGTAVNWLQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEIFTMFPAGNGGTIELIYTQTYSPTTLATARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPSGTSAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQRMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFTDDGWSVLSCDGAEDVIIAVNSIKNLSTITNQANSLASLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKASPYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHTLAQDDAFVSKDIHLLQICSGVDETAVGACSELIFAPINEMFPDDAPLVPSGFRIIPLDSRSGDSKDSSSNLTLDLASGLEVTANNVAADASLSHNSRSVLTIAFQFPFDSSLRDNVAIMARQYVRSVISSVQGVAMAISHSGISPAAGTRLSPASPEAITLANWISQSYSFYIGRELLRCDSVGSDSVLKRLWHHQDAILCCSVKSLPVFMFANQAGFDMLETSIVALQDITLDKIFDESGRKALCAEFTKLMQQGFAYLPAGICMSTMGRHVSYEQAIAWKVLAADESIVHCLAFSFINWSFV* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00748 841 Coils Coil 91 122 - -
Pte12g00748 841 Pfam Homeodomain 26 84 IPR001356 GO:0003677
Pte12g00748 841 MobiDBLite consensus disorder prediction 1 20 - -
Pte12g00748 841 Gene3D - 19 92 - -
Pte12g00748 841 SUPERFAMILY Bet v1-like 164 376 - -
Pte12g00748 841 Pfam START domain 165 372 IPR002913 GO:0008289
Pte12g00748 841 CDD homeodomain 26 86 IPR001356 GO:0003677
Pte12g00748 841 FunFam Homeobox-leucine zipper protein REVOLUTA 26 81 - -
Pte12g00748 841 CDD START_ArGLABRA2_like 159 375 - -
Pte12g00748 841 ProSiteProfiles 'Homeobox' domain profile. 21 85 IPR001356 GO:0003677
Pte12g00748 841 CDD bZIP 78 117 - -
Pte12g00748 841 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289
Pte12g00748 841 SUPERFAMILY Homeodomain-like 24 88 IPR009057 -
Pte12g00748 841 Gene3D - 200 381 IPR023393 -
Pte12g00748 841 SMART HOX_1 23 89 IPR001356 GO:0003677
Pte12g00748 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 22 841 IPR044830 GO:0003700
Pte12g00748 841 SMART START_1 164 374 IPR002913 GO:0008289
Pte12g00748 841 Pfam MEKHLA domain 697 840 IPR013978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00748 Pte-Chr12 7976232 7983214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00748 3 842 Homeobox Transcription Factor Family AT5G60690 80.212 0.0 1417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte12g00748 START 4.3e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00748 K09338 - qsa:O6P43_000330 1454.11