Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00711 ATGGGAAGGGAAGCAACGTGTTATGACTCGTTGAATGACTTGTCCAGAGTGAAAATGGCAGGTTCTGGACGGCAAGGTGAGAGCTTGTTCACTGAGTCAGTGAGGAATAACCACATCAACAGCAACAGTAATGGCAATAGCAGCAGCTGCAACAAGCCAAGGTACAGGGAATGCCTAAAGAACCATGCGGTGAGTATGGGTGCGCACGCCCTTGATGGCTGTGGAGAATTCATGCCTGCCGGAGCTGAAGGAACACTAGATGCCCTCAAGTGCGCCGCTTGCAATTGCCACCGTAATTTCCATCGTAAAGAAACAGATATAGGTGGGGTAGGTGGAGTCGGATTCGGACCAATGGACCCTTATTTACTGAACCAGTATCCTCATCATCATTACCCACCCCAGTTCACACCATACTACCGAACCCCAGCCGGGTATCTGCATGTAGGTGGGCAGCAAAGAGGGGCTATGCTGGCTTTACCTTCGACGTCCGGAGGTGGTGGCGGTGGTGGTGCACAAAGTACAAGGGAACTGGACCAGGAGGATGTCTCGATCCCGAGTGGTGGAAGTGGGTCAAAGAAAAGGTTTAGGACGAAGTTCTCACAGGAGCAGAAGGAAAAGATGTTGGAGTTGGCTGAGAAGTTGGGTTGGAGGATGCAGAAGCATGATGAGCCTGTGGTCCAGCACTTCTGTGATGAAACTGGAGTCAAGCGTCACGTGCTTAAGGTCTGGATGCATAACAACAAGCACACTCTGGGCAAGAAGCCCTAG 768 0.5143 MGREATCYDSLNDLSRVKMAGSGRQGESLFTESVRNNHINSNSNGNSSSCNKPRYRECLKNHAVSMGAHALDGCGEFMPAGAEGTLDALKCAACNCHRNFHRKETDIGGVGGVGFGPMDPYLLNQYPHHHYPPQFTPYYRTPAGYLHVGGQQRGAMLALPSTSGGGGGGGAQSTRELDQEDVSIPSGGSGSKKRFRTKFSQEQKEKMLELAEKLGWRMQKHDEPVVQHFCDETGVKRHVLKVWMHNNKHTLGKKP* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00711 255 SUPERFAMILY Homeodomain-like 182 253 IPR009057 -
Pte12g00711 255 MobiDBLite consensus disorder prediction 160 196 - -
Pte12g00711 255 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Pte12g00711 255 Gene3D - 178 253 - -
Pte12g00711 255 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 54 104 IPR006456 -
Pte12g00711 255 Pfam ZF-HD protein dimerisation region 54 105 IPR006456 -
Pte12g00711 255 NCBIfam homeobox domain, ZF-HD class 192 248 IPR006455 -
Pte12g00711 255 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 41 251 - -
Pte12g00711 255 FunFam Zinc-finger homeodomain protein 2 179 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00711 Pte-Chr12 7232091 7232858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00711 52 251 ZF-HD Transcription Factor Family AT4G24660 53.000 7.03e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte12g00711 ZF-HD_dimer 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00711 - - qsa:O6P43_025228 327.02