Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00707 ATGTTTCCTTTCCACCCTGGTAAGGAGCTGGTTATCCAGTTCTCCTCAACCCCGCCAAAGCAAGAGGACCCAATCTTGGATCCATATTTGATTTTGGATAGCCGTAATCATTGTCTGGATACCAGTAACAGTTCTATTCCTAAGAATTTCGTCAGCAAAAGACAGTGGACGCACCATGGCTATGATGAGAGCTACAATGATTCAAATGATCGAAAGAAAATAATGCACAGGGACATTGAAAGGAAAAGAAGGCACGAAATGTCTAGCCTCTATACTTCACTTAGAGCTCTTCTCCCTTATGAGTTCATCAAGGGAAAGCGTTCGAAATCAGATCATGTGAATGAGATAGTGAACTACATCAAACACTTCCAGCAGAAAATCAAAGAACTAAACGGCAAGAGAGATGAACTAAAGAAAGAGTCCAACTTCAGACATGAAGAGAATGTTAACTGCAGCTCAAGTAGCTCATTTGTGATTCAAGAAATATGCGGGAGGACAAAAACTGAAATCACTGATCATGGATTTATAGAGAATGGGTTACCCCTTTCAAAAGTATTAGGAGTCTTGCTTGAACAAGGACTTGATGTTGTTAGCTGCGTTTCCAGCATAGTGAATGACAGACTACTACATACTATCCAGTATGAGGCTGTAAATTCCACAAGTATAGACCTTTCTACGCTGAGAGGCGAACTAATTAAGAGAGAAGCTTCTACATCTGGAAATGTTTCTGTGTGA 735 0.4041 MFPFHPGKELVIQFSSTPPKQEDPILDPYLILDSRNHCLDTSNSSIPKNFVSKRQWTHHGYDESYNDSNDRKKIMHRDIERKRRHEMSSLYTSLRALLPYEFIKGKRSKSDHVNEIVNYIKHFQQKIKELNGKRDELKKESNFRHEENVNCSSSSSFVIQEICGRTKTEITDHGFIENGLPLSKVLGVLLEQGLDVVSCVSSIVNDRLLHTIQYEAVNSTSIDLSTLRGELIKREASTSGNVSV* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00707 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 141 IPR036638 GO:0046983
Pte12g00707 244 SMART finulus 77 129 IPR011598 GO:0046983
Pte12g00707 244 FunFam Transcription factor bHLH126 63 150 - -
Pte12g00707 244 CDD bHLH_AtORG2_like 72 142 - -
Pte12g00707 244 Coils Coil 120 140 - -
Pte12g00707 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
Pte12g00707 244 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 58 230 - -
Pte12g00707 244 Gene3D - 62 153 IPR036638 GO:0046983
Pte12g00707 244 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00707 Pte-Chr12 7164824 7166026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00707 66 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 48.045 1.62e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g00707 HLH 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00707 - - gmx:100780888 185.267