LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte12g00685	ATGATGGAGGGTTTTCATCACTGGAGACTAAGATTGGTTGCCTTTTGCATCTTCCTCTCAATTAGATCAGCTTCCTCAAATAAAGATTTTGTAAGCATAGCATGCTGTGCTGATTCAACTTATACAGATCCACAAACCAAGTTGAATTACACAACAGATTTCAGTTGGTTCTCGGATAGAACAAACTGCAGACAAACAACTACGAACTCTTCAGGTTATGACAAAGCTAGGGTTTTTGACATAGTCCAGGGAAAGAGATGTTACAATTTGCCCACAATCGAAAATCAAGAGTATCTATTAAGGGGAATCTTTGCTTCTGATGAATTTAGAACATCTCAAAATTATCCCTTTGATGTTTCAATTGGGGTGTCCTCGTTAAATGCAGCAAACTTATTTGAGGACCTGAAAATTGAAGGGGTTTTCAGAGCTACTAAGAACTCCACAGACTTCTGCCTTTTCACAAAACAAGAAAAGCCTTACATTTCATTGATTGAATTAAGGCCATTACAGAACGCAGAATATTTGAACGGTTTGGCTTCTAGTGTTTTGAAAGTGATCAGAAGAGTTAATTTGGGCAGCACAGCAGATGACATCAGGTACCCAAGTGACCTGAGTGACAGAATTTGGAAATCAAATTCAAGCCAAGCTTTTAGGTCCTACCCATCAACAGCAGCCAAGATTTCCAACTACAGTGACAGTGTGAAATTGAGAACCCCTCCTCAAGTTTTGTTGACTGCTGCAACTCATCCAGAAAGGTTGCACTTTATCTACGATGACCTCGAGGCAGGGGATCATGAGTACCGTGTGTTCCTGCACTTCATGGAACTCAATGACACAGTCAGATTTGGACAAAGGGTTTTTGACATTTACGCCAACAATCAGATTAAAGACAGAAGCTATGATATATTGGCTAATGGTTCAAGATATAAACAAGTTTATTTTGATATCACCGCAAACGGGTTACTCAATTTGACCATGATTAAGGCCTCTGGGTCTCAGCTTGGTCCAATTTGTAGTGCTTATGAGATCTTCCAAGTGCGCCCTTGGATTCGGGAGACTAACCAAGCAGATTCTGAAGCAATACTTAAGGTGAGGAAGGAGTTAGTGCAAAACAATGAAAATGCACTGTTGGATAGTTGGTCTGGAGACCCGTGTGCACTTTATCCATGGGAAGGCTTGGAGTGTGAGAATTCAAGTGGTTCTCTTGTTATCACCAAACTGGATATCTCCTCAAGTAACCTTAAAGGACAACTTCCTTCGAGTGTCACCAAGCTCAGAAACCTTAAAATGCTGAACCTGAGCCATAACGAATTCAATGGCAATATTCCTTCATTTCCAGCTTCTTCAGTACTGTTATCAGTAGATGTGAGCCACAACGATCTAGAGGGAATGCTACCTGATTCTTTTGCCTCTCTTCCAAATTTAAAATCATTGTACTTTGGCTGCAATCGTCATTTGAGCGAGCAAAACCCACTAAACTTCAGCAGCTCAATTGAAACAGACTATGGAAGATGTGCATCTAAAAGAAGTATACAACAAACTGTCATTGTGACTGTCATATGTGGATCACTACTAATTGCCTTCGCTATTGGAACTATTGTTGCCTGCCTTTATAGAAGAAAATTAGTAGCTGGGAAAAAATTTGGTGGAAAGGGTCATCTCATGGAATCAAGCATAATTTTCTCTTTTCCAAGCAAAGATGACTTCATCATAAGCACAGCGGCTATTCAACCATTTACCCTGGATTACATAGAGGTTGCGACAGAGAAGTATAAGACTATGATAGGTGAAGGAGGATTTGGTTCTGTCTACCGTGGAATTCTAAATGATGGTCAGGAAGTAGCAGTGAAGGTTCGGTCAGCTACATCCACCCAAGGAACACGAGAATTTGAAAATGAGCTAAACCTACTTTCGGCAATAAGGCATGAAAACCTTGTCCCCCTTATTGGATACTGCTGTGAGAATGAGCAGCAGATTCTCGTGTATCCTTTTATGTCCAATGGCTCTTTACAGGATCGGTTATATGGGGAAGCGGCGAAACGGAAAGTGTTGGACTGGCCAACCAGACTATCTATTGCTCTTGGTGCTGCTAGAGGTCTGACATATCTTCACACATTTTCCGGACGATCCATCATACATAGAGATGTGAAGTCAAGTAACATACTGCTGGACCATAGCATGTGTGCAAAGGTTGCAGATTTTGGTTTTTCAAAATACGCTCCACAAGAAGGAGATAGTGGTGCTTCTCTTGAAGTCAGAGGGACAGCAGGATATCTGGATCCTGAGTACTACACGACCCAGCATTTATCTTCAAAAAGTGATGTGTTCAGCTTTGGTGTTGTTCTGCTTGAAATAGTGAGTGGTCGGGAGCCCCTCAATATACACAGGCCTAGGAATGAATGGAGTTTGGTGGAATGGGCTAAACCATATATAAGGGAGTCGAAAGTCGATGAGATTGTGGATCCTGGCATTAAAGGAGGATACCATGCTGAGGCAATGTGGAGGGTAGTAGAGGTGGCTGTTGCATGTATTGAGCCCTTCTCTGCATACAGGCCATGCATGGCTGACATAGTCCGTGAGTTAGAAGATGCTTTAATCATAGAGAACAATGCATCTGAATATATGAAGTCCATAGATAGCCTTGGAGGATCCAATCGCTACTCTATTGTCTTAGAAAAAAGGATATTCAGTCAACCACCTCCTACTACAGAAACCTCAACCGCAACCACCGAAACTCAATCCTCGTCTGCCCCAAAACCAAGATAG	2766	0.4179	MMEGFHHWRLRLVAFCIFLSIRSASSNKDFVSIACCADSTYTDPQTKLNYTTDFSWFSDRTNCRQTTTNSSGYDKARVFDIVQGKRCYNLPTIENQEYLLRGIFASDEFRTSQNYPFDVSIGVSSLNAANLFEDLKIEGVFRATKNSTDFCLFTKQEKPYISLIELRPLQNAEYLNGLASSVLKVIRRVNLGSTADDIRYPSDLSDRIWKSNSSQAFRSYPSTAAKISNYSDSVKLRTPPQVLLTAATHPERLHFIYDDLEAGDHEYRVFLHFMELNDTVRFGQRVFDIYANNQIKDRSYDILANGSRYKQVYFDITANGLLNLTMIKASGSQLGPICSAYEIFQVRPWIRETNQADSEAILKVRKELVQNNENALLDSWSGDPCALYPWEGLECENSSGSLVITKLDISSSNLKGQLPSSVTKLRNLKMLNLSHNEFNGNIPSFPASSVLLSVDVSHNDLEGMLPDSFASLPNLKSLYFGCNRHLSEQNPLNFSSSIETDYGRCASKRSIQQTVIVTVICGSLLIAFAIGTIVACLYRRKLVAGKKFGGKGHLMESSIIFSFPSKDDFIISTAAIQPFTLDYIEVATEKYKTMIGEGGFGSVYRGILNDGQEVAVKVRSATSTQGTREFENELNLLSAIRHENLVPLIGYCCENEQQILVYPFMSNGSLQDRLYGEAAKRKVLDWPTRLSIALGAARGLTYLHTFSGRSIIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSGASLEVRGTAGYLDPEYYTTQHLSSKSDVFSFGVVLLEIVSGREPLNIHRPRNEWSLVEWAKPYIRESKVDEIVDPGIKGGYHAEAMWRVVEVAVACIEPFSAYRPCMADIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVLEKRIFSQPPPTTETSTATTETQSSSAPKPR*	922

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte12g00685	921	Gene3D	Transferase(Phosphotransferase) domain 1	665	881	-	-
	Pte12g00685	921	Gene3D	Phosphorylase Kinase; domain 1	561	664	-	-
	Pte12g00685	921	Gene3D	-	183	347	-	-
	Pte12g00685	921	CDD	STKc_IRAK	595	862	-	-
	Pte12g00685	921	FunFam	Leucine-rich repeat receptor-like kinase	357	489	-	-
	Pte12g00685	921	FunFam	Nodulation receptor kinase	557	664	-	-
	Pte12g00685	921	SUPERFAMILY	L domain-like	374	494	-	-
	Pte12g00685	921	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 3	665	881	-	-
	Pte12g00685	921	ProSitePatterns	Protein kinases ATP-binding region signature.	595	617	IPR017441	GO:0005524
	Pte12g00685	921	Pfam	Protein tyrosine and serine/threonine kinase	592	861	IPR001245	GO:0004672\|GO:0006468
	Pte12g00685	921	Pfam	Malectin-like domain	37	346	IPR024788	-
	Pte12g00685	921	ProSiteProfiles	Protein kinase domain profile.	589	866	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte12g00685	921	MobiDBLite	consensus disorder prediction	897	921	-	-
	Pte12g00685	921	PANTHER	OS07G0107800 PROTEIN-RELATED	31	865	-	-
	Pte12g00685	921	MobiDBLite	consensus disorder prediction	898	921	-	-
	Pte12g00685	921	Gene3D	Ribonuclease Inhibitor	354	513	IPR032675	-
	Pte12g00685	921	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	711	723	IPR008271	GO:0004672\|GO:0006468
	Pte12g00685	921	SUPERFAMILY	Protein kinase-like (PK-like)	570	861	IPR011009	-
	Pte12g00685	921	SMART	serkin_6	589	866	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte12g00685	Pte-Chr12	6783345	6789814	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte12g00685	11	868	Receptor kinase-like Gene Family	AT1G67720	34.078	4.83e-135	426

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Pte12g00685		Malectin_like	4.4e-49	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte12g00685	-		-	gmx:100781986	1195.26