Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00671 ATGACAGACTACAGTTTACCTCCGACTATGAATCTATGGACCGACGATAACTCTTCTGTTATGGATGCTTTCGTAACCTCCGATCTTACCTCTATATGGCCGCTGGCGCCGCCACCGAATAACCACCCCAGTCATCATCTTCAACAGCAACAATCCTCTGCTTCTACCATAACCACAGCAACCACAGCTGGTGGGTCTGAACCAGCCAAAGTCCTCTCTCAATCTCAGCAGTCTGTCGATGCTTTTAACCAAGAAACCCTCCACCAACCTCTTCAGGCAATGATTGAGGGTGCCCGTGAGAGCTGGACCTATGCTATATTCTGGCAACCTTCATATGATTTTTCTGGTTCCTCTGTCTTGGTCTGGGGTGATGGGTACTATAAAGGTGATGTGGATAAAGGTAAAGGCAAAGCCAAAACTACTTCATCGGCGGTTGAGCAAGAGCACCGCAAGAAAGTGCTGCGGGAGCTGAATTCCTTGATTTCCGGGTCGTCACCATCCAACGACGACGAGGAGGTCACTGACACCGAGTGGTTCTATCTCGTTTCTATGACTCAGTCCTTCATCAACGGCAGTGGTTTACCCGGTCAGGCGTTCTACAATTCTTGCCCGATTTGGGTTACCGGTGCAGAGCGTCTGTCCGCTTCCCCCTGTGAACGAGCTAGACAGGCACAGGTGTTTGGCCTTCAAACTATGGTGTGTGTGCCTTCAGCTACTGGCGTTGTTGAGTTGGGATCGACTGAGCTGATTTTCCAGAGCTCCGATTTGATGAACAAGGTAAGGGTTTTGTTCAATTTCAATAGTCCTGAAATGGGCAATTGGCCATTGACGAACGCCAGTACTGATCAAGGCGAGAACGACCCATCATCCCTTTGGATCAACGATCCATCTGCTGTGAATACCATAAAACCAAGTTCTGTTCCCAGTTCTGCTACTGCTAACACTAGCCCCGCAATTTCAAAGACCATTCAATTCGAGAATCCTGTTTCTAGTTCTATAACTGAATCACCCAGTGTAATTCATATTCAAAACCCACCCCAGAGTCACCATCAACGTCAACAGTCTGAACAAAACCAAACCCAGGCTCTCCTCTCCAGAGAATTGAATTTCTCTGAATATGGGTTTGATGGATCTATTGCAAGACATGGAAATTCACATATTTTAAAACCTGAATCTTGTGAAATTTTGAATTTTGGGGAAAGTAATAAGAGGAGTTCCTATAGTGGTAGTGGGAATTTCTTTTCTGGCCAGTCTCAATTTGTTAGTGAAGAAAATAAGAAGAGGAAGTCCCCCACTTCTAGAGGTAATAACGAAGAAGGGATATTGTCCTTCACTTCCGGTGTGATTTTATCGAGTTCCGGTATGGTGAAATCAGGTGGAGGTGTAGATTCCGACCAATCAGACCTTGAAGTTTCGGTGGTGAAAGAGGTGGACAGTGGCAGAGTAGTGGAGCCAGAAAAGCGACCACGCAAAAGAGGTCGAAAGCCAGCTAATGGCAGAGAGGAGCCTCTAAATCATGTTGAAGCTGAGAGGCAGAGGAGAGAGAAGCTCAACCAGAGATTCTATGCTCTTCGAGCTGTAGTTCCGAATGTGTCAAAAATGGATAAAGCATCGCTATTAGGTGATGCTATATCTTACATCAATGAGCTGAAGTCAAAGCTTAAAACTTTGGAGATTGATAAAGAAGATTTACAGAAGCAGATGGATTCAGTCAAGCAAGAGCTTGAGTTGGCGGAAACTTCTCAAGGGGGGTCTCCATCGGATCAAGAACTGAAAACGTCAAATCCAGTCGGAGGAAGGTTGATAGATTTGGAGATAGAAGTGAAGATTATTGGTTGGGATGCTATGATTCGAATTCAGTGCAACAAGAAGAACCATCCAGCAGCAAAGGTAATGGCAGCTCTGAAGGAATTGGACTTAGAGGTGCATCATGCTAGTATTTCAGTGGTGAATGATTTGATGATTCAACAAGCCACAGTGAAGATGGGGAGTCGATTCTACACTCAGGAGCAGCTTAGGACAGCTCTATCATCAAAAGTTGGTGATACCCGATAG 2055 0.4555 MTDYSLPPTMNLWTDDNSSVMDAFVTSDLTSIWPLAPPPNNHPSHHLQQQQSSASTITTATTAGGSEPAKVLSQSQQSVDAFNQETLHQPLQAMIEGARESWTYAIFWQPSYDFSGSSVLVWGDGYYKGDVDKGKGKAKTTSSAVEQEHRKKVLRELNSLISGSSPSNDDEEVTDTEWFYLVSMTQSFINGSGLPGQAFYNSCPIWVTGAERLSASPCERARQAQVFGLQTMVCVPSATGVVELGSTELIFQSSDLMNKVRVLFNFNSPEMGNWPLTNASTDQGENDPSSLWINDPSAVNTIKPSSVPSSATANTSPAISKTIQFENPVSSSITESPSVIHIQNPPQSHHQRQQSEQNQTQALLSRELNFSEYGFDGSIARHGNSHILKPESCEILNFGESNKRSSYSGSGNFFSGQSQFVSEENKKRKSPTSRGNNEEGILSFTSGVILSSSGMVKSGGGVDSDQSDLEVSVVKEVDSGRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLKTLEIDKEDLQKQMDSVKQELELAETSQGGSPSDQELKTSNPVGGRLIDLEIEVKIIGWDAMIRIQCNKKNHPAAKVMAALKELDLEVHHASISVVNDLMIQQATVKMGSRFYTQEQLRTALSSKVGDTR* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00671 684 PANTHER MYC 69 679 IPR045084 GO:0003700|GO:0006355
Pte12g00671 684 Gene3D - 493 581 IPR036638 GO:0046983
Pte12g00671 684 MobiDBLite consensus disorder prediction 570 595 - -
Pte12g00671 684 MobiDBLite consensus disorder prediction 416 440 - -
Pte12g00671 684 Coils Coil 547 581 - -
Pte12g00671 684 MobiDBLite consensus disorder prediction 339 360 - -
Pte12g00671 684 MobiDBLite consensus disorder prediction 574 594 - -
Pte12g00671 684 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 87 264 IPR025610 -
Pte12g00671 684 MobiDBLite consensus disorder prediction 477 511 - -
Pte12g00671 684 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 502 575 IPR036638 GO:0046983
Pte12g00671 684 SMART finulus 507 556 IPR011598 GO:0046983
Pte12g00671 684 MobiDBLite consensus disorder prediction 303 323 - -
Pte12g00671 684 CDD bHLH_AtAIB_like 498 574 - -
Pte12g00671 684 MobiDBLite consensus disorder prediction 34 77 - -
Pte12g00671 684 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 501 550 IPR011598 GO:0046983
Pte12g00671 684 Pfam Helix-loop-helix DNA-binding domain 505 550 IPR011598 GO:0046983
Pte12g00671 684 MobiDBLite consensus disorder prediction 42 77 - -
Pte12g00671 684 FunFam Transcription factor bHLH13 494 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00671 Pte-Chr12 6625384 6628043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00671 1 681 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 54.323 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g00671 bHLH-MYC_N 2.1e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00671 K13422 - qsa:O6P43_025161 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00671 12 6625384 6628043 Pte12g00671 12 6625384 6628043 RCT