Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00670 ATGGCGTCCGAAAACTCCACAGATAAAAACACCATTTTCAGAAAGCTGAAGGCTAAGTCGGAAAACAAGATGTGTTTCGATTGTAATGCAAAGAATCCAACTTGGGCTTCCGTCACCTATGGGATCTTCCTTTGCATCGACTGCTCTGCTGTACATCGCAGTCTCGGCGTCCACATCAGCTTTGTGAGGTCCACAAACTTGGATTCTTGGACTCCTGAGCAGCTAAAAATGATGAGCTTTGGGGGAAACAACCGTGCACAAGTTTTCTTTAAGCAACATGGCTGGACTGATGGTGGAAAGATAGAGGCTAAGTATACGTCTAGAGCTGCTGATCTGTATAGGCAACTTCTTTCTAAGGAAGTAGCCAAAAGTATGGCAGAGGATGCAGGTCTTCCATCATCTCCTGTTACTGCTCAGACATCACAAAGTACTAATGGGATACCTGATGTGAGCAAGAACAAACCCCCAAAAGAGATCTCTTTTGAGAAGCAAGGATCACTGGAGACCACATCTTCACCTAAAGCTTCTAATATAACTCTTTCTAGTACTGTCAAGAAGCCCATAGGTGCAAGGAAAACAGGAAAAACTGGAGCCCTTGGTGCTAGAAAACTGACTTCCAAGCCAAGTGAGACTCTATATGAGCAGACACCTGAGGAACCAGTTGCTCCAGTTTCATCTTCAACAAACAATGCTCCTACAGCACGATCATCCTTGACATCTAGATTTGAGTATGTTGAAAACGGTCAATTATCTGAGGGGAATAATGGAGGCGCACACATGACAGGCCATGTCCTTCCTCCAAAGTCTTCTAGTTTTTTTGCTGACTTTGGAATGGATAGTGGTTTTCCTAAGAATTCAGGTTCAAGTTCCTCAAAAATTCAAGTTGAGGAGACTGATGAGGCGAGAAAGAAGTTTTCAAACGCTAAATCTATTTCTTCAGCTCAATTTTTTGGGGATCATAATCAAGCTTCTGATTTAGAAGCAAAGGCTTCGTTGCAGAAGTTTTCGGGTTCAAGTGCCATCTCAAGTTCTGATTTTTTTGGTCATGACTCCAATAACACCATAGATCTTGCTGCAAGTGACCTGATCAATCGACTCTCTTTCCAGGCACAGCAGGATATCTCTTCCCTGAAAAATATTGCAGGAGAAACTGGAAAAAAACTCAGCTCCTTGGCATCCTCTCTAATGACAGATCTTCAGGACAGAATCCTCTAA 1215 0.4296 MASENSTDKNTIFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLSKEVAKSMAEDAGLPSSPVTAQTSQSTNGIPDVSKNKPPKEISFEKQGSLETTSSPKASNITLSSTVKKPIGARKTGKTGALGARKLTSKPSETLYEQTPEEPVAPVSSSTNNAPTARSSLTSRFEYVENGQLSEGNNGGAHMTGHVLPPKSSSFFADFGMDSGFPKNSGSSSSKIQVEETDEARKKFSNAKSISSAQFFGDHNQASDLEAKASLQKFSGSSAISSSDFFGHDSNNTIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASSLMTDLQDRIL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00670 404 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Pte12g00670 404 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Pte12g00670 404 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Pte12g00670 404 Pfam Putative GTPase activating protein for Arf 11 108 IPR001164 GO:0005096
Pte12g00670 404 CDD ArfGap_ArfGap2_3_like 8 123 - -
Pte12g00670 404 Gene3D Arf GTPase activating protein 1 136 IPR038508 -
Pte12g00670 404 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Pte12g00670 404 MobiDBLite consensus disorder prediction 133 150 - -
Pte12g00670 404 MobiDBLite consensus disorder prediction 220 236 - -
Pte12g00670 404 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 1 137 - -
Pte12g00670 404 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 4 404 - -
Pte12g00670 404 MobiDBLite consensus disorder prediction 163 186 - -
Pte12g00670 404 SUPERFAMILY ArfGap/RecO-like zinc finger 11 125 IPR037278 -
Pte12g00670 404 MobiDBLite consensus disorder prediction 128 236 - -
Pte12g00670 404 SMART arf_gap_3 10 126 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00670 Pte-Chr12 6605458 6610877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00670 6 83 C2H2 Transcription Factor Family AT3G07940 49.367 2.36e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00670 K12493 K11855 gmx:100785169 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00670 12 6605458 6610877 Pte12g00670 12 6605458 6610877 RCT