Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00665 ATGGCTCTAGATGCTCTGTCATCAGCTTCCAATGAGCTTTTCAACTTCATTAACATTTACGACACAATCTCTGCAACCCCACTTGCCAGTTATGACTCTCCGGAGTCGTGTAGTTACTTATTAGCAAATAGTACTGTAACACCTCTAAACCAAGCTGGTGACGATCAGATGTCTGAAATCGATAGGAGACGCTTTTCTTTTGGATCAGAAGCAAATAATATCAATGGACGTATGACACTCACCAGACAGAAATCAGTTGGACTCCAAGGAAGAAAAAAAAGGAGGAGGAGGCCAAGGATTTGCAAGAACAAGGAAGAAGCTGAAACCCAAAGAATGACTCATATTACAGTTGAAAGAAACCGCCGTAAGCAGATGAATGAGCACCTTGCTGTTATGCGCTCTCTCATGCCTGAATCTTACGTCCAAAGGGGTGACCAAGCATCCATAGTAGGTGGTGCCATTGAATTTGTGAAGGAACTTGAACATATGTTGCAGTCGCTTGAAGCTCAAAAACTCCAGATTGTACAACACGCAGCAGATATGCCAGAAAGTACTGATGAAAATAATACTTTATCCAAATTGGTGGAACCTCCATTTTCAAATTTTTTTGTGTATCCTCAGTACAGTTGGTCCCAGGCTCCGAACAACTATACAACCAAGAGCAAAGGAGCTAGAGCTGACATTGAGGTTACCTTGATAGAAACTCATGCAAGCCTTCGGATTCTCTCCCGAAGAACCCAAAGGCAGCTATCAAAGTTGGTTGCTGGACTTCAATCACTCTATCTCGCTATCCTTCATCTCAATGTAACCACTGTGGAACAATTAGTCCTCTACTCCATCAGTGCCAAGGTTGTTGAAGGATGCCAACTGACTACAGTGGATGACATTGCAACTGCAGTCCACAACTTACTTAGTATGATTGAGGAGGAACCTGCACTTTGCCGTTGA 948 0.4304 MALDALSSASNELFNFINIYDTISATPLASYDSPESCSYLLANSTVTPLNQAGDDQMSEIDRRRFSFGSEANNINGRMTLTRQKSVGLQGRKKRRRRPRICKNKEEAETQRMTHITVERNRRKQMNEHLAVMRSLMPESYVQRGDQASIVGGAIEFVKELEHMLQSLEAQKLQIVQHAADMPESTDENNTLSKLVEPPFSNFFVYPQYSWSQAPNNYTTKSKGARADIEVTLIETHASLRILSRRTQRQLSKLVAGLQSLYLAILHLNVTTVEQLVLYSISAKVVEGCQLTTVDDIATAVHNLLSMIEEEPALCR* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00665 315 Pfam Helix-loop-helix DNA-binding domain 110 161 IPR011598 GO:0046983
Pte12g00665 315 SMART finulus 115 166 IPR011598 GO:0046983
Pte12g00665 315 Gene3D - 101 177 IPR036638 GO:0046983
Pte12g00665 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 177 IPR036638 GO:0046983
Pte12g00665 315 PANTHER MAX DIMERIZATION, MAD 82 310 - -
Pte12g00665 315 Coils Coil 157 177 - -
Pte12g00665 315 CDD bHLH_AtFAMA_like 112 171 - -
Pte12g00665 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 160 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00665 Pte-Chr12 6570871 6572830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00665 101 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 57.527 1.35e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g00665 HLH 5.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00665 - - qsu:112034586 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00665 12 6570871 6572830 Pte12g00665 12 6570871 6572830 RCT