Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00663 ATGGATTTTGGTCGAGATTCTGGGTATGGAAATGTTGTTCAAATAATCACCGGGAATGGAGGTGGTGAGAATTGGCCAGAAGCAGTTTGGGCGACAGAGGATGAATATCGATTCTATAACGACGCTGATGCTGAAACTCCCTCTCACTCTGATTATGATCAACGACAACCCCGATCTTATTCTGGAAGTGAACCTCCAAACAAGAAGTCAAGGAGTTCACAGGATGCAACCTCAGGGAATCAGGCCAAGGCCATAGGGAAAATGTTTTTCAAGACTAAGCTTTGTTGCAAATTCAGAGCTGGGTCTTGCCCCTACATCTCAAACTGCAATTTCGCTCATAGTGTTGAAGAACTTCGTCGGGCACCACCTAATTGGCAAGATATTGTGTCTGCCAATGAAGAAGTAAACGCAGCAGCGGCTGAGCCTAGGGAGAAATTTCAGATTCCATCTATTGTGTCATCTAATTATGCTGCGGATTCGCCGAGGTCATACAAAGGTCGCCATTGCAAGAAGTTTTACACAGAAGAAGGATGCCCGTATGGAGACAACTGTACATTTTTTCACGATGAGAAATCCAGGAATAGAGAGAGTGTGGCTATTAGTTTAGGTCCTAGTGGCTACGGTGGTGCTACAAGTGGATCAAGTGGAAAGCCCTCCAATTGGAAAACGAGGATTTGTAACAAGTGGGAGATGACTGGATATTGTCCATTTGGATCAAAATGCCATTTCGCTCATGGTGCTACAGAACTTAACAAGTATGGTGGGGGAGAAACTAGAGATTCTGCTGCTGTTGCTCCTGAAACAAAAGAAGGAGGGGTACCTTCAAAAGCTCCTGCAGATAATGTGATTGCTCCTGTATCTCATTTGGATGTCTATCATATTGGTGTTCCATCACAACGGCCACCTATTGTGCTTCAGAAGCCAGGCCAGAGAATTCGTGAGAAGTGGAGAGGTCCAGATAAGATAAATAGGATATATGGGGATTGGATTGATGACATTGAGTAA 1005 0.4438 MDFGRDSGYGNVVQIITGNGGGENWPEAVWATEDEYRFYNDADAETPSHSDYDQRQPRSYSGSEPPNKKSRSSQDATSGNQAKAIGKMFFKTKLCCKFRAGSCPYISNCNFAHSVEELRRAPPNWQDIVSANEEVNAAAAEPREKFQIPSIVSSNYAADSPRSYKGRHCKKFYTEEGCPYGDNCTFFHDEKSRNRESVAISLGPSGYGGATSGSSGKPSNWKTRICNKWEMTGYCPFGSKCHFAHGATELNKYGGGETRDSAAVAPETKEGGVPSKAPADNVIAPVSHLDVYHIGVPSQRPPIVLQKPGQRIREKWRGPDKINRIYGDWIDDIE* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00663 334 MobiDBLite consensus disorder prediction 40 80 - -
Pte12g00663 334 FunFam zinc finger CCCH domain-containing protein 15-like 214 252 - -
Pte12g00663 334 SUPERFAMILY CCCH zinc finger 162 191 IPR036855 GO:0046872
Pte12g00663 334 FunFam Zinc finger, CCCH-type 157 195 - -
Pte12g00663 334 SMART c3hfinal6 220 247 IPR000571 GO:0046872
Pte12g00663 334 SMART c3hfinal6 163 190 IPR000571 GO:0046872
Pte12g00663 334 SMART c3hfinal6 89 115 IPR000571 GO:0046872
Pte12g00663 334 PANTHER CCCH ZINC FINGER/TIS11-RELATED 206 285 IPR045877 GO:0003729
Pte12g00663 334 Gene3D - 157 195 - -
Pte12g00663 334 Gene3D - 85 121 - -
Pte12g00663 334 Gene3D - 214 252 - -
Pte12g00663 334 FunFam Zinc finger CCCH domain-containing protein 85 120 - -
Pte12g00663 334 MobiDBLite consensus disorder prediction 257 279 - -
Pte12g00663 334 Pfam CCCH-type zinc finger 167 189 IPR041367 -
Pte12g00663 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 221 246 IPR000571 GO:0046872
Pte12g00663 334 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Pte12g00663 334 ProSiteProfiles Zinc finger C3H1-type profile. 163 191 IPR000571 GO:0046872
Pte12g00663 334 ProSiteProfiles Zinc finger C3H1-type profile. 89 116 IPR000571 GO:0046872
Pte12g00663 334 MobiDBLite consensus disorder prediction 53 80 - -
Pte12g00663 334 SUPERFAMILY CCCH zinc finger 218 251 IPR036855 GO:0046872
Pte12g00663 334 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872
Pte12g00663 334 SUPERFAMILY CCCH zinc finger 87 120 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00663 Pte-Chr12 6560948 6563787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00663 222 250 C3H Transcription Factor Family AT1G68200 62.069 3.85e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte12g00663 zf-CCCH 6.6e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00663 - - pcin:129284509 535.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00663 12 6560948 6563787 Pte12g00663 12 6560948 6563787 RCT