Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00655 ATGGGAAGGCCACCAGGTTGTGACGAGCGTGATCTGAAGAAAGGGCCATGGACACCTGAAGAAGACCAGAAACTTGTGGATCATATTAAGGAACACGGACATGGAAGTTGGAGAACACTTCCAAAGCTAGCTGGTCTTAATAGGTGTGGGAAAAGTTGCAGGTTGAGGTGGGCAAATTATCTTAGGCCTGATATCAAAAGGGGCAAATTCACTGAAGATGAAGAGAGAATCATCATCAACCTTCATGCAGTTCTTGGAAACAAGTGGTCAAGGATTGCAGGCCATCTTCCAGGGCGAACTGATAATGAGATCAAGAACTATTGGAACACCTATCTTAGAAAAAAGCTACTTCAGATGGGAATTGATCCAAGTACGCACAAGCCAAGAACTGACATCAACCACCTCATGAATATTTCACAACTGCTTGGCCTGTCAAACCTAAGTAGTTCAATGAATCTTTGGGGTAACCCTATTGCAATGCAATCTGCAGATATCACTCAAGTAGCTAAACTCCAGCTCTTGCAAAATCTACTGCAATCTATGAACCCTAGTGTGTTTCTTAACTTGGTAAATCCGAGTCTCTTGGCAAACCACAGCCTCAATAATCCATTTCCAGGTCTTGTTAATAGGACAAACAGTGACCTCCTGATAGGTCTGCTTCAGCAGTATGCAAACCGCGGGCTTTTCAATCCACAACAGTGTTCGCCTCAGGCTAACACCAAATCAGAGTCAGGCACAGAAGATGGAATGAATGATCTAGAGTTCTTTGCTGTCAACAATAGCTTGAGTACCTCACAAAGTGATCTAGCAGTTAACAACTTTATTACTTCACCTGATGATCCAACAAACTATGTGCTTCCTCCTTTGGTGTCAGATTCCTCAACTACAGCTTGCAGCCCTTCAAACCTAATGGAAGGCACTTGTAACCCAACTCAAGACTCCACACAATCACCCTCATCGTCTTCAGTCTTTGAAGCTTGGGAGAAACTGATGGACGATGACACGAGCGGAACATACTGGAAAGAAATTCTAGAGTAG 1038 0.4364 MGRPPGCDERDLKKGPWTPEEDQKLVDHIKEHGHGSWRTLPKLAGLNRCGKSCRLRWANYLRPDIKRGKFTEDEERIIINLHAVLGNKWSRIAGHLPGRTDNEIKNYWNTYLRKKLLQMGIDPSTHKPRTDINHLMNISQLLGLSNLSSSMNLWGNPIAMQSADITQVAKLQLLQNLLQSMNPSVFLNLVNPSLLANHSLNNPFPGLVNRTNSDLLIGLLQQYANRGLFNPQQCSPQANTKSESGTEDGMNDLEFFAVNNSLSTSQSDLAVNNFITSPDDPTNYVLPPLVSDSSTTACSPSNLMEGTCNPTQDSTQSPSSSSVFEAWEKLMDDDTSGTYWKEILE* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00655 345 CDD SANT 69 112 IPR001005 -
Pte12g00655 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte12g00655 345 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte12g00655 345 SMART sant 13 63 IPR001005 -
Pte12g00655 345 SMART sant 66 114 IPR001005 -
Pte12g00655 345 CDD SANT 16 61 IPR001005 -
Pte12g00655 345 Gene3D - 69 116 - -
Pte12g00655 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte12g00655 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte12g00655 345 FunFam Transcription factor MYB39 69 130 - -
Pte12g00655 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte12g00655 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 293 - -
Pte12g00655 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte12g00655 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte12g00655 345 MobiDBLite consensus disorder prediction 301 322 - -
Pte12g00655 345 Gene3D - 11 67 - -
Pte12g00655 345 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00655 Pte-Chr12 6481804 6483078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00655 1 345 MYB Transcription Factor Family AT3G02940 47.143 2.13e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte12g00655 Myb_DNA-binding 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00655 K09422 - qsa:O6P43_025137 367.851