Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00644 ATGGTGGAAGGTAGGGTTTTTACCTCCAGAGAAGCAAGAAATGGGTTAGAATTCTTAAGGCGTAAGAGACTTGAACGGATGAGATCGGCAAATGGCACAGAGACAATAAATATAACCAACATGACGGCCAGAAGTGGGGGAGATGCTTTAAGAGCTTCTGTATCTTGCGGTATGAGGTTGCATGGCAATTCAGATGCCTCTTACAAGCCCAAGGTGGATAAGTTTAACACAACTGATCTCAATTGGATTGAGAAAATTCCAGAATGCCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGGTTTATTTGCAGAAGATAGCTCCAGAAGCTTCAAAATATGGTATTTGCAAGATTATTTCACCATTGACTGCATCTGTTCCTGCGGGGGTTGTGTTGATGAAGGAGCAAGCAGGATTCAAGTTCACTACCAGAGTGCAACCATTTCGTCTTGCAGAGTGGGATTCTGATGACAGAGTGACCTTTTTCATGAGTGGCGTAAATTATACATTTCATGATTATGAAAAACTGGCGAACAAGGTTTTTGCACGCAGATACTGCAGTGCAGGAAATCTTCCCGAGACATACATGGAAAAAGAATTTTGGCAAGAAATTGCTTGTGGGAAGACAGAAACTGTGGAATATGCATGTGATGTTGATGGAAGTGCCTTTTCATCTTCACCCAGCGATCAACTTGGAAATAGCAAATGGAACTTGAAGAATCTTTCACAGCTGCCCAAGTCTACTTTGCGCCTTCTTGAGAGGGTGATCCCGGGAGTGACTGAACCCATGCTATACATTGGGATGTTGTTTAGTATGTTTGCATGGCACGTAGAGGATCATTACTTGTACAGCATCAATTATCATCATTGTGGGGCATCAAAAACTTGGTATGGAGTTCCTGGTCATGCAGCTTTAGAATTTGAAAGTGTGGTTAGGGAACATGTATATACCAATGATATCCTATCAAGTGAAGGAGAAGAAGGAGCTTTTGATGTACTACTGGGGAAGACGACCATCTTTCCTCCAAATGTTCTCTTGGAGCATCAAGTTCCTGTTTACAAGGCAGTCCAAAAGCCTGGGGAATTTATAATTACCTTCCCTAGAGCTTATCATGCTGGGTTTAGCCATGGCTTCAATTGTGGTGAGGCTGTCAACTTTGCAATTGCAGATTGGTTTCATCTTGGTGCCATTGCTAGTGGACGTTATGCACTCCTAAATAGAGTGCCTTTACTTTCTCATGAAGAGCTTCTCTGTAAGGAAGCAATGCTTCTTCAGAGCCAAGTAGAGCATCAAAATGCAGACTCGCCTGAAGACTTGTTATCTCAACATAGTATAAAAGTTGCTTTTATTAATTTGATGCGCTTCCAGCATTGTGCTCGCTGGTCCCTAATGAAATCAAGAGTTTGCACAAGCATTTCTGCAAACCTCCATGGGACCATTGTGTGCAGTCTCTGCAAACGCGATTGTTATGTAGTGTATGTTAACTGCAGCTGTCACATGCACCCAGTGTGCCTTCGTCATGATATCAAGTCACTTGACTTAGCATGTGGAAACAAACATACACTCTGTATAAGGGAGGATATTTCAGAACTGGAAGATGCAGTTAAGAAATTTGAAAGCGAAATTGAGATGTCATATGAGATAATTTGGAGAGCCAACAGCAACGAAAATATGTATTCATATCCAGTATTAAACATGTTTCAGAATGCTGAAGTGGCTGGCTATTCTCCTTATTGTGAAATCAAAGTGGAGACGGATCTGGAACTGAGCTTTGTGAATCTTTCTCAAAAGCAAGAACAGAACTCAAATTCTCAGTCCACTTTAAGGCATTGCTCTGGAAATCTCAGACCTGATGCACATCATGTTTCTCTGTTTTCCTCCTCACCGGCCCTCAGTTCTGCTGCTTCACCAGTGTTATTTTCTTTTCAAGAACATCACGAGAGATTGTCTGCCCTGGGAAATGAATGCTCGAGTAAACACAATGTTCATAAAACAGATATTACACCGACTCTGAACAATGACAGTGACGATTCTGATATGGAGGCATTTAGGGTGAAACGACGTTCATCATTGAAGTTGGACAAAAGAAGTATCAATGGCGCCCCAGATTCAAATCATCAGACTGAACATCAGGGTCTTAAACGGCTGAAAAGAGTCCTTCCAGGACCATCGATTTCCTCCAGCAGAGCTGATGAATCAAGTGGCAAATTTGGCAATTCAACTCGACCACCATCTGAAAATGCTCATAGGTTTCCGATAGAAAGTAACAATCCAAATTCTATTAATTTAAAGAAGATAGGTAGTAAGGAAGCAATAATAGTTGGGCAAAACGAACAGTTGACAAAAGAACGGCTGCTGCATCGAAGTTTGAAGGAAGCAACCCCTGTACAATTTGGACCTAAGCGCCTTAAAGTAAGAGGCCCTTCATTTCAAGGGACGGAGAGCAGATTTTGTTGA 2466 0.4185 MVEGRVFTSREARNGLEFLRRKRLERMRSANGTETINITNMTARSGGDALRASVSCGMRLHGNSDASYKPKVDKFNTTDLNWIEKIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLTASVPAGVVLMKEQAGFKFTTRVQPFRLAEWDSDDRVTFFMSGVNYTFHDYEKLANKVFARRYCSAGNLPETYMEKEFWQEIACGKTETVEYACDVDGSAFSSSPSDQLGNSKWNLKNLSQLPKSTLRLLERVIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGVPGHAALEFESVVREHVYTNDILSSEGEEGAFDVLLGKTTIFPPNVLLEHQVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIADWFHLGAIASGRYALLNRVPLLSHEELLCKEAMLLQSQVEHQNADSPEDLLSQHSIKVAFINLMRFQHCARWSLMKSRVCTSISANLHGTIVCSLCKRDCYVVYVNCSCHMHPVCLRHDIKSLDLACGNKHTLCIREDISELEDAVKKFESEIEMSYEIIWRANSNENMYSYPVLNMFQNAEVAGYSPYCEIKVETDLELSFVNLSQKQEQNSNSQSTLRHCSGNLRPDAHHVSLFSSSPALSSAASPVLFSFQEHHERLSALGNECSSKHNVHKTDITPTLNNDSDDSDMEAFRVKRRSSLKLDKRSINGAPDSNHQTEHQGLKRLKRVLPGPSISSSRADESSGKFGNSTRPPSENAHRFPIESNNPNSINLKKIGSKEAIIVGQNEQLTKERLLHRSLKEATPVQFGPKRLKVRGPSFQGTESRFC* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00644 821 FunFam Lysine-specific demethylase isoform A 84 433 - -
Pte12g00644 821 Gene3D Cupin 89 451 - -
Pte12g00644 821 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Pte12g00644 821 SMART JmjN_1 88 129 IPR003349 -
Pte12g00644 821 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
Pte12g00644 821 MobiDBLite consensus disorder prediction 680 697 - -
Pte12g00644 821 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Pte12g00644 821 PANTHER LYSINE-SPECIFIC DEMETHYLASE 82 789 - -
Pte12g00644 821 SMART cupin_9 236 406 IPR003347 -
Pte12g00644 821 SUPERFAMILY Clavaminate synthase-like 167 422 - -
Pte12g00644 821 MobiDBLite consensus disorder prediction 662 679 - -
Pte12g00644 821 Pfam jmjN domain 90 122 IPR003349 -
Pte12g00644 821 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Pte12g00644 821 MobiDBLite consensus disorder prediction 662 763 - -
Pte12g00644 821 MobiDBLite consensus disorder prediction 729 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00644 Pte-Chr12 6295430 6301342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00644 86 544 JUMONJI Transcription Factor Family AT1G30810 32.358 2.05e-62 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte12g00644 JmjC 5.9e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00644 - - qsa:O6P43_025118 1098.19