Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00643 ATGGAGCTGTTCCCAGCTCAACCAGATTTGTCTCTTCAAATAAGCCCACCAAACAGCAAAGCCTCATCTAGCTGGAGAAGAAGTGCAACAGAAGATGAAATGGATTTGGGGTTTTGGAGAAGAGCTTTGGATTCCAGAAACTCCATGTCTTCAATGGCCAAAGCGGACAACAACTCCTTTGAGCTCTCACTCTCAAATCAAAGGGCTGCAGACTTCACAGCAAACTCCAACAACTTCATCAACATTCATCACTTTCAAAACATGAGTCCCAATCCCCTCACTTCAGTTCAGTTACAACAAAGCCACTATGCTCAGCCTCGTCACCATCGGCCACAGCTGTTTCATCACCAACAACAGGTACATCATCATGGCGGCCATGGCGGGTTAAGTCAAGAGCTCGGGTTTCTGAGGCCCATTAGAGGAATTCCTGTCTACCAAAACTCTTCTCCTTTCCCATTAGCTCAACAACAATGCTTAGATGCTTCCAATGCTTCTACACCCTCTTCCATACCTAACCCGGCCACCAACAATACAACTGGTTCAAGTTATTTCCAGTCTCAAGGTCTCATGAGGTCAAGATTTCTATCAAGGTTACCAGCTAAACGTAGCATGAGAGCCCCTCGCATGCGTTGGACTACAACCCTCCATGCTCGGTTTGTTCATGCCGTTGAGCTTTTGGGTGGCCATGAAAGAGCTACACCCAAATCTGTTCTTGAACTAATGGATGTCAAGGATCTAACTTTGGCGCATGTTAAATCTCATTTGCAGATGTACAGAACGGTCAAGACCACGGATAAAGCAGCAGCTTCTTCTGGGCAACATGATCTATGTGAAAATGGCTCCTCAGGAGATACTTCAGAAGACCTAATATTTGACCTTCGCAGTTCAAGAAGACAAGAGCAATCTATTCAGCACAAAAGGCAAAGTTTAAATCAAGAAAAGAATTATGGAGGTCTATGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTAAACCAAAGGATTCTGCTAGAAAGGTGCAGTCCATTGAGAAAGATCATGTGGATCTAAAGTGCCTAAGCTATGAGAGAATATCAGAAGGGAGCTCATCAACAAGCCATTCAGGAACAAGCCCCAAGAAACCTAATCTGGATTTGGAGTTCACCTTGGGGAGGTCACATTGA 1164 0.4485 MELFPAQPDLSLQISPPNSKASSSWRRSATEDEMDLGFWRRALDSRNSMSSMAKADNNSFELSLSNQRAADFTANSNNFINIHHFQNMSPNPLTSVQLQQSHYAQPRHHRPQLFHHQQQVHHHGGHGGLSQELGFLRPIRGIPVYQNSSPFPLAQQQCLDASNASTPSSIPNPATNNTTGSSYFQSQGLMRSRFLSRLPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAASSGQHDLCENGSSGDTSEDLIFDLRSSRRQEQSIQHKRQSLNQEKNYGGLWSNSSREAWLHGKPKDSARKVQSIEKDHVDLKCLSYERISEGSSSTSHSGTSPKKPNLDLEFTLGRSH* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00643 387 MobiDBLite consensus disorder prediction 162 183 - -
Pte12g00643 387 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Pte12g00643 387 MobiDBLite consensus disorder prediction 265 284 - -
Pte12g00643 387 FunFam Myb family transcription factor 205 263 - -
Pte12g00643 387 MobiDBLite consensus disorder prediction 358 375 - -
Pte12g00643 387 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Pte12g00643 387 MobiDBLite consensus disorder prediction 11 25 - -
Pte12g00643 387 Gene3D - 206 263 - -
Pte12g00643 387 MobiDBLite consensus disorder prediction 358 387 - -
Pte12g00643 387 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 386 IPR044847 GO:0000976|GO:0006355|GO:0010158
Pte12g00643 387 Coils Coil 293 313 - -
Pte12g00643 387 MobiDBLite consensus disorder prediction 1 28 - -
Pte12g00643 387 SUPERFAMILY Homeodomain-like 204 260 IPR009057 -
Pte12g00643 387 MobiDBLite consensus disorder prediction 296 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00643 Pte-Chr12 6277847 6282600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00643 1 384 G2-like Transcription Factor Family AT4G17695 38.406 3.25e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte12g00643 Myb_DNA-binding 1.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00643 - - qsa:O6P43_033356 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00643 12 6277847 6282600 Pte12g00643 12 6277847 6282600 RCT