Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00636 ATGGGTCGGAAGCACAGAGACGAATCACACAATCTCTGCAAACCACTTGCAGAAGAAGCCCCCGATGTCAAATTCGAGAAGAAGAAGAAGAAGAAGGATAAGAAGAAAAATAACGCAGACTATAAACAGAGTGAGAGCAATGAGGTGAACGGAGCTAAACAGAAGAGAAAACTGGAAGAAGGAACCGAGCCTAAGGATACCAATGGATCGCTAAAGAAGAAGAATAAGAAATTGAAAGTAAACGGAGAGGATAGTAAAACACACGAAGGAAAATATCACCCTGGAGAAAATGGTGGTAGTGATGGAAAAGACGATGGAGTAGTGAAAGATGGTTCTGTGGTGGTTACCGGGAAGGACGTTAACGAATCGAAATATGAGGCAGTGAAGTCTTTTGCTGCATCTGGGCTTCCGAAGAATGTCCTAGAGTGCTGTGCGAATTTTGATAAACCGTCGCCCATACAGTCGCAGGCGTGGCCGTTTTTGTTAAATGGTCGTGATTTTATAGGGATTGCGGCAACTGGGTCAGGAAAGACATTGGCATTTGGCGTTCCAGCCATGATGCATGTGTTGGGCAAAAGGAAAGGTAAAGGTTCAAGGGGACGGAATCCGCTTTGCCTTGTACTTTCGCCAACAAGGGAGCTGGCTCAGCAGATATCTGATGTTATGTGTGATGCTGGGCAATATTGTGGTGTCAACTCCATATGCTTATATGGTGGAACCTCAAAAGGACCGCAAATATCTGCTTTGAAGTCTGGTGTTGATATTGTTATTGGAACTCCAGGACGCATTACAGATTTGGTAGAAACAGGTGTTTTGCACCTAAGTGAGGTATCCTATGCGGTCCTTGATGAAGCTGATCGAATGCTTGATATGGGATTCGAACAGGCTGTACGATCAATACTAGGCCAGACATGTTCTGCTCGTCAAATGGTGATGTTCAGTGCCACATGGCCTCTATCTGTTCATCAATTGGCTCAAGAATTTATGGATCCTAACCCCGTGAAGGTTGTGGTGGGGTCAGAAGATTTAGCTGCAAACCATGATGTCATGCAGATAGTTGAGGTCATTGATGAACAATCGCGGGAGAAGAGGTTGGTGGCTTTGCTGGAAAAGTATCACCAAAAGCAGAGGAATAGAGTGTTGGTATTTGTCTTGTACAAATGGGAAACAACAAGAGTTGAAAAAATGCTCCAAGAAGGGGGTTGGAAGGTCGTTTCTATTCATGGCGATAAAGCACAGCAGCAACGGACAAAAGCATTATCTTTATTCAAGGAAGGAAGCTGCCCTTTGATGATTGCAACTGATGTGGCTGCCCGTGGATTGGATATTCCGGATGTTGAAGTGGTGATCAATTATAGCTTTCCTCTTACTACTGAGGATTATGTGCATAGAATTGGACGGACTGGACGTGCCGGTAAAAAAGGTGTCGCTCACACTTTCTTCACACAGCAAAATAAGGGGCTTGCAGGTGAGCTGGTTAATGTTCTAAGAGAAGCAGGACAAATTGTTCCAGAGGCCCTTCTAAAGTTTGGTACACACGTGAAGAAAAAGGAGTCCAAGCTGTATGGGGCTCACTTCAAGGAGATTGCAGTTGATGCACCAAAATCACAGAAGGTCAGGTTTGATGACTCTGATGAAGATTAA 1644 0.4446 MGRKHRDESHNLCKPLAEEAPDVKFEKKKKKKDKKKNNADYKQSESNEVNGAKQKRKLEEGTEPKDTNGSLKKKNKKLKVNGEDSKTHEGKYHPGENGGSDGKDDGVVKDGSVVVTGKDVNESKYEAVKSFAASGLPKNVLECCANFDKPSPIQSQAWPFLLNGRDFIGIAATGSGKTLAFGVPAMMHVLGKRKGKGSRGRNPLCLVLSPTRELAQQISDVMCDAGQYCGVNSICLYGGTSKGPQISALKSGVDIVIGTPGRITDLVETGVLHLSEVSYAVLDEADRMLDMGFEQAVRSILGQTCSARQMVMFSATWPLSVHQLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVIDEQSREKRLVALLEKYHQKQRNRVLVFVLYKWETTRVEKMLQEGGWKVVSIHGDKAQQQRTKALSLFKEGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPEALLKFGTHVKKKESKLYGAHFKEIAVDAPKSQKVRFDDSDED* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00636 547 CDD DEADc 145 336 - -
Pte12g00636 547 Gene3D - 339 514 IPR027417 -
Pte12g00636 547 Pfam DEAD/DEAH box helicase 152 321 IPR011545 GO:0003676|GO:0005524
Pte12g00636 547 MobiDBLite consensus disorder prediction 1 27 - -
Pte12g00636 547 Pfam Helicase conserved C-terminal domain 364 472 IPR001650 -
Pte12g00636 547 SMART ultradead3 146 352 IPR014001 -
Pte12g00636 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 485 IPR027417 -
Pte12g00636 547 CDD SF2_C_DEAD 349 481 - -
Pte12g00636 547 Gene3D - 104 338 IPR027417 -
Pte12g00636 547 MobiDBLite consensus disorder prediction 1 110 - -
Pte12g00636 547 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 511 IPR001650 -
Pte12g00636 547 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 507 - -
Pte12g00636 547 FunFam ATP-dependent RNA helicase RhlB 338 515 - -
Pte12g00636 547 SMART helicmild6 391 472 IPR001650 -
Pte12g00636 547 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 158 335 IPR014001 -
Pte12g00636 547 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 281 289 IPR000629 -
Pte12g00636 547 MobiDBLite consensus disorder prediction 49 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00636 Pte-Chr12 5932822 5937861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00636 115 492 Eukaryotic Initiation Factors Gene Family AT1G72730 33.850 4.65e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00636 K14811 - gmx:100806057 782.711