Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00625 ATGCCCTTAGGCACGGCTATACATAACATAGAAGTCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAGGTGGGGAATGTTGGGGTGAAGCAGAAGAGTTTGGGTAGAGCCGGATCGAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGGGTGGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGAAGGGCCCCAATCGGAGTAGTAAGAACTAGCATTCGTATTGAGATTGGAACTCATGGGGAAGAAAATAGATTTATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTTGAATCGGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTATCAAGGTAATAGCTATGAATAGTCATCAACTCCCGGTAAAGGGTAGAAGAATGGGACCTATTACGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 663 0.4329 MPLGTAIHNIEVTLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVKQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGVVRTSIRIEIGTHGEENRFMDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGIKVIAMNSHQLPVKGRRMGPITGHTMHYRRMIITLQPGYSIPPLRKKRT* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00625 220 Gene3D Ribosomal protein L2, domain 3 63 128 IPR014726 -
Pte12g00625 220 FunFam 50S ribosomal protein L2 1 61 - -
Pte12g00625 220 Gene3D - 1 62 IPR014722 -
Pte12g00625 220 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 127 214 IPR012678 GO:0003735|GO:0005840|GO:0006412
Pte12g00625 220 SMART Ribosomal_L2_C_2 1 110 IPR022669 GO:0003735|GO:0005840|GO:0006412
Pte12g00625 220 ProSitePatterns Ribosomal protein L2 signature. 84 95 IPR022671 GO:0003735|GO:0005840|GO:0006412
Pte12g00625 220 FunFam 50S ribosomal protein L23, chloroplastic 128 213 - -
Pte12g00625 220 SUPERFAMILY Translation proteins SH3-like domain 1 111 IPR008991 -
Pte12g00625 220 PANTHER RIBOSOMAL PROTEIN L2 1 112 IPR002171 GO:0003735|GO:0005840|GO:0006412
Pte12g00625 220 Pfam Ribosomal protein L23 131 212 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pte12g00625 220 Pfam Ribosomal Proteins L2, C-terminal domain 1 107 IPR022669 GO:0003735|GO:0005840|GO:0006412
Pte12g00625 220 ProSitePatterns Ribosomal protein L23 signature. 200 215 IPR001014 GO:0019843
Pte12g00625 220 Hamap 50S ribosomal protein L23 [rplW]. 128 217 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pte12g00625 220 Gene3D - 129 213 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00625 Pte-Chr12 5817966 5818756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00625 1 102 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.248 3.66e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00625 K02886 - qsa:O6P43_035413 210.69