LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte12g00624	ATGTCTAGGAGGCAAACTTGCATGAAATTAGTTTTTCTGCTCAGCGTTTCGCCCTTGCTGTGCTTCCCTGATTCAATTTCAATATCAGCTTCAGATAACACACTCAAACAAGGTGATACACTCAACTATAATGATTCCATCATTTCCTCAAATTCTCAATACAGCTTACGTTTCTTCCCACTGGGGGATAACAATAAAAAGAGCTACTTGGTAATCTATCACCCTCTGAGGCTGGTTTGGATTGCCAACAGAGATACCCCCATTCTCGATGATTCAGGAGTTCTCACAATAGATAACAATGGAACCTTCATGATATCACGCAGTGCAGGGAATCCTATTGTTCTCTACTCAGATGATGGAGCTGCTGGGAGTACCAGAGTCGCAACACTGCAAGACGACGGCAACCTTGTCCTCAGTGAACTGAATTCCGATGGCTCTACTAAGAAAATATTGTGGCAGAGCTTTCTTTCTCCCACTGACTGTTTATTTCCAGGGATGGAATTAGGAAAGGTGGGTGATGAAAGAGCACCGGTAATTTCTCTCACCTCGTGGTTGACAGGCAAGGACCCATCTTCAGGAGCTTTTACGCTTGACTGGGATCCCATGGAACACCAGATGGTAGTTAGGCGAAGAGGGGTCATTGTTTGGACAAGCGGGGTTTTGAGAGATGGATTCTTCCAAAATATACCTAGAATATATATGGAGGATTACACACCAGTGGTAAGTAAGGACGGTAATTCCTTGAGCTTCTGGGCAAATGGAAGCGCATATTGGGGATTAAATGAGGAAGGAGTTCATTATGGTAATGCAAGTGTTGGACCAGGGGATTGCAGAGCTATCTGTTGGGACGACTGTGATTGTTTGGCTTATGATGAAGCCGATGATATGGGGTGCCAATTCTGGAGAGGGAAATCCCAATTGAAATTTATTCCTTCTTTTCAGCCACGTTCACCGTATGTTATTTCTACTACTCCAGGATCTTCTCTAGTTCCCACCCTCGCACCCCAATCTTTTTCTGGAGCACATGTGCCAAGAGGAAACATCGAAATCAAACCAGGGAGGAGGCAATTGATTCGGATAGGAATGGTAGACCCGGAAAACATAACTCTAGTCTCTCTAGTTTCAAAATACAAAACGCTAACCCTAATGGTTTTTTTCGTGATCCTCAATTTTCTTGTTGCTCAAGTCAACTGGGATGGGATCTTAAGAAAGACTATATCAGTGGACAGAGATGAGCTTGAAAACAATCTAAGAGTATTCAATTTCAAGTGCCTATCTGAAGCTACACATAAATTTTCTGTAGAAAATATGCTTGGACAGGGTGGTTTTGGCCCTGTTTACAAGGGAACATTGCCAGAAGGCAATAAGATTGCAGTGAAGAGACTTTCAAGAAGTTCAGGACAGGGACTAAAGGAATTAAAAAACGAGCTGAATCTTATAGCCAAACTTCAGCATATAAATTTGGTTCATCTTGTAGGTTACTGTATTGAACGTGACGAAAAGATGTTAGTTTATGAATATATGCCCAATAAAAGTTTGGACTCCATTCTGTTCGGTAGGTTTATAGCCAAATTTTGTGTCACTAGTGTTTTTGTTAAGGGCTTGCTTTATCTGCATGAGCACTCAAGACTAGCGATCATACATAGAGACCTGAAACCTAGCAACATTTTGTTGGATGCATCCTTCAACCCTAAAATTTCAGACTTTGGAATGGCAAGGATATTCAAGAGGAACGAGTTGATGGCTAACACTATGAGAATTGTGGGAACATATGGCTACATGTCTCCTGAGTATGCAATGGAGGGTTTATTCTCAGTCAAATCAGATGTGTTCAGTTTTGGAATCCTAATTCTTGAAATTGCGTGGGAACTTTGGCAGAAAGAAGCCTGGACAGAACTGGTTGATCCAACCCTTAAAGGCTCTTGGTCACTGAATCAAATGAATAGAATTATCCATGTCAGTCTTTTGTGTGTGGAAGAATCAGCACTGAACAGACCTACAGTTTCGGAAGTCATTTCTATGCTAACAAATGAGAATCCATTGGCCTCAGTACAAAAACCAGCATTTTTAATTTGGAACACTGCCACCAAAAAAGAATACCACAGTATAAATTGTTTATCCTTGTCTTCTATTACTGCTAGGTGA	2145	0.414	MSRRQTCMKLVFLLSVSPLLCFPDSISISASDNTLKQGDTLNYNDSIISSNSQYSLRFFPLGDNNKKSYLVIYHPLRLVWIANRDTPILDDSGVLTIDNNGTFMISRSAGNPIVLYSDDGAAGSTRVATLQDDGNLVLSELNSDGSTKKILWQSFLSPTDCLFPGMELGKVGDERAPVISLTSWLTGKDPSSGAFTLDWDPMEHQMVVRRRGVIVWTSGVLRDGFFQNIPRIYMEDYTPVVSKDGNSLSFWANGSAYWGLNEEGVHYGNASVGPGDCRAICWDDCDCLAYDEADDMGCQFWRGKSQLKFIPSFQPRSPYVISTTPGSSLVPTLAPQSFSGAHVPRGNIEIKPGRRQLIRIGMVDPENITLVSLVSKYKTLTLMVFFVILNFLVAQVNWDGILRKTISVDRDELENNLRVFNFKCLSEATHKFSVENMLGQGGFGPVYKGTLPEGNKIAVKRLSRSSGQGLKELKNELNLIAKLQHINLVHLVGYCIERDEKMLVYEYMPNKSLDSILFGRFIAKFCVTSVFVKGLLYLHEHSRLAIIHRDLKPSNILLDASFNPKISDFGMARIFKRNELMANTMRIVGTYGYMSPEYAMEGLFSVKSDVFSFGILILEIAWELWQKEAWTELVDPTLKGSWSLNQMNRIIHVSLLCVEESALNRPTVSEVISMLTNENPLASVQKPAFLIWNTATKKEYHSINCLSLSSITAR*	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte12g00624	714	Gene3D	-	27	155	IPR036426	-
	Pte12g00624	714	Pfam	D-mannose binding lectin	78	184	IPR001480	-
	Pte12g00624	714	FunFam	Os07g0541700 protein	508	590	-	-
	Pte12g00624	714	Gene3D	Phosphorylase Kinase; domain 1	396	507	-	-
	Pte12g00624	714	ProSiteProfiles	Protein kinase domain profile.	432	682	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte12g00624	714	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	400	507	-	-
	Pte12g00624	714	SMART	blect_4	32	158	IPR001480	-
	Pte12g00624	714	ProSiteProfiles	Bulb-type lectin domain profile.	32	151	IPR001480	-
	Pte12g00624	714	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	546	558	IPR008271	GO:0004672\|GO:0006468
	Pte12g00624	714	Pfam	Protein kinase domain	433	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte12g00624	714	SUPERFAMILY	Protein kinase-like (PK-like)	411	675	IPR011009	-
	Pte12g00624	714	PIRSF	SRK	3	257	IPR024171	GO:0004674
	Pte12g00624	714	PIRSF	SRK	247	713	IPR024171	GO:0004674
	Pte12g00624	714	SUPERFAMILY	alpha-D-mannose-specific plant lectins	77	261	IPR036426	-
	Pte12g00624	714	CDD	B_lectin	32	158	IPR001480	-
	Pte12g00624	714	Gene3D	Transferase(Phosphotransferase) domain 1	508	687	-	-
	Pte12g00624	714	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	128	693	-	-
	Pte12g00624	714	SMART	serkin_6	432	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte12g00624	Pte-Chr12	5813252	5816465	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte12g00624	382	711	Receptor kinase-like Gene Family	AT3G45860	44.809	3.09e-97	313

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pte12g00624		Pkinase	4e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte12g00624	-		-	qsa:O6P43_029361	514.612