Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00621 ATGGAAAGGAACTGTAAGATTGGAGGATTCGGTGGTGGTGGTAATGGAGGGAATTATCCGTACGAAAATGGGGTGGTGATGACTAGAGACCCAAAGCCAAGGCTGAGATGGACAGCTGAGCTTCATGATCAGTTTGTTGATGCTGTCACTAAACTGGGTGGCCCTGACAAAGCAACTCCTAAGTCTGTGTTGAGGTTGATGGGACTGAAAGGATTGACTTTGTATCATTTGAAGAGCCATTTACAGAAGTACAGACTTGGCCAGCAAGCTCGAAAACAAAGTACCCCAGAACAAAACAAAGAGAACAAAAGTGGGGAATCCTATTTACAGTTCAGTGACAATCCCACAGGAGCAAATACTAATTCAAGAGTAAACAGTGAAAGAGGGGATATTCCAATGGCAGAGGCATTGAGGTGTCAATTAGAAATACAAAGAAGATTGCAAGAACAACTCGAGGTACAGAGAAAGATACAAATGAGAATAGAGGCTCAAGGGAAATATTTGCAAGCTATATTAGAGAAAGCACATAAGATTCTCCCCCAACCCCACGATATAAATGGACATGGAAACCTAGAAGCAGCAAAAGCTCAATTAACAGATTTCAATTCTGCTTTGTTGAATCTCATGGAGGATATGGATAGAGATAGCAAAGAAAACATACTAGAAGGTATCGGTGATATTTATAAGAAGTCCCAGAGTTCAGGTTTTCAGATTTACCAAGCGAAAGAGAGGGGAGACAAAGATCATCATAAGCTTGTTAAAATAGAAGGAGAAAGTCCTACCCCATTTGACTTGAACATCAATGGTAGCCATGAACTTGTTTCTGCAGGTGAAACTGAAGTGGATCGCAAGTTGCTTTCATACAGATTGTAA 873 0.4089 MERNCKIGGFGGGGNGGNYPYENGVVMTRDPKPRLRWTAELHDQFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQSTPEQNKENKSGESYLQFSDNPTGANTNSRVNSERGDIPMAEALRCQLEIQRRLQEQLEVQRKIQMRIEAQGKYLQAILEKAHKILPQPHDINGHGNLEAAKAQLTDFNSALLNLMEDMDRDSKENILEGIGDIYKKSQSSGFQIYQAKERGDKDHHKLVKIEGESPTPFDLNINGSHELVSAGETEVDRKLLSYRL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00621 290 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Pte12g00621 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 21 218 IPR044848 GO:0003700
Pte12g00621 290 Gene3D - 31 89 - -
Pte12g00621 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Pte12g00621 290 SUPERFAMILY Homeodomain-like 32 89 IPR009057 -
Pte12g00621 290 Coils Coil 134 154 - -
Pte12g00621 290 MobiDBLite consensus disorder prediction 86 128 - -
Pte12g00621 290 MobiDBLite consensus disorder prediction 86 127 - -
Pte12g00621 290 FunFam Myb family transcription factor 31 89 - -
Pte12g00621 290 Coils Coil 191 211 - -
Pte12g00621 290 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Pte12g00621 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00621 Pte-Chr12 5647887 5650764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00621 8 201 G2-like Transcription Factor Family AT4G13640 50.754 3.95e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte12g00621 Myb_DNA-binding 9.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00621 - - qsa:O6P43_025081 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00621 12 5647887 5650764 Pte12g00621 12 5647887 5650764 RCT