Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00618 ATGAGTCAGTCATGGATGTTGGCAGGAACTCAGCCTCTGTTTACGGTGGCTCAGTGGCATGAGTTTGAACACCAAGCTCACATCTTTAAGTACTTCAAGGCTGGTTTGCCTGTTCCTCCTGAGCTCCTTGCACCTATCCAGAATAGTTTCCAGTTGATGTCATCCAACCTAGTCCCCCACCCCACCTTAGGGTATGGTTCTTACTATGGAAAGAAGATTGACCCTGAACCGGGAAGGTGTAGAAGGACAGATGGTAAGAAGTGGAGGTGCTCTAAAGATGCAAATCCGGACTCCAAGTACTGTGAGCGGCACATAAACCGCCGCAAATGCCGTTCAAGAAAGCCTGTGGAATCAGAAACTGCTTCTCAAACATTGTCAGATTCGTCATCAAACAATGCTGCGGGAATCAGAGATGGCTGTGGAAGCTTACACAGCCTGCCTTTAAACTCAACTTGTAGTGTCGAGACCTCGAGTCTTGGAAGTAATCTTTTACAGTTGCAGATGGGGCTCTTTTCAAAAAATAATACTAAGAAAGAGTACAGTACGATTGATACAATGCAAATATACAGGTCTGAGCAGAAGCTTGAGACAGATAAAAATTTCTTACTGGAGGGCTTAGAAAATGCAAGGTTTGAACAGAATCTTGAGTTGGATTGTCACAACTTTTTCCAGGAAGACTTGGTGAATGCAAGAAGTAACAGTTTGCTTGGAACTTCAGACAGTACCTGGCCTGATACATCTCATGCCTCCTCAAGCTCTGTGGTGGGGTCAAGAAATGCTTCCTTTTGTGGTTGGCAACTCCTTCCAACTTCAGACAATCCATGA 825 0.4485 MSQSWMLAGTQPLFTVAQWHEFEHQAHIFKYFKAGLPVPPELLAPIQNSFQLMSSNLVPHPTLGYGSYYGKKIDPEPGRCRRTDGKKWRCSKDANPDSKYCERHINRRKCRSRKPVESETASQTLSDSSSNNAAGIRDGCGSLHSLPLNSTCSVETSSLGSNLLQLQMGLFSKNNTKKEYSTIDTMQIYRSEQKLETDKNFLLEGLENARFEQNLELDCHNFFQEDLVNARSNSLLGTSDSTWPDTSHASSSSVVGSRNASFCGWQLLPTSDNP* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00618 274 Pfam QLQ 14 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte12g00618 274 Pfam WRC 75 117 IPR014977 -
Pte12g00618 274 ProSiteProfiles WRC domain profile. 74 118 IPR014977 -
Pte12g00618 274 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte12g00618 274 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte12g00618 274 PANTHER GROWTH-REGULATING FACTOR 5 12 226 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pte12g00618 274 MobiDBLite consensus disorder prediction 111 133 - -
Pte12g00618 274 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00618 Pte-Chr12 5627458 5630973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00618 11 117 GRF Transcription Factor Family AT3G13960 56.757 4.58e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pte12g00618 WRC 1.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00618 - - qsa:O6P43_033410 259.996