Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00617 ATGTTTACATGCATAGCATGTTCGAAACAAGCTGTGGAGGATGGAGGAGACGAAGGAGGTGCTGGTGAAAGTGGTACGCCCAACACGAAGGAAGCCGTCAAAAGCCTGACAACGCAGATCAAGGACATGGCATTAAAATTTTCAGGTGCTTACAAACAATGCAAGCCATGTACAGGCTCTAGTAGTTACAGAAAAGGACAAAGACCGTATTACCCTGATTTTGACACAATATCAGAGGGAGTGCCATACCCTTATTATGGAGGTGCAAGTTCATCTTCAACCCCTGCTTGGGATTTTACTGCTGGCTCTCACCAGCTCATTAGAAAAACTGACAACAGATTCACTACGGTGTTTACCGGTGACAATACCCCCCGAGCATCTGGACTATCTTGTGATGTAGTGCTAGAAGACGAGGATGTACCAAAGGAGTGGATGGCGCAAGTGGAACCTGGTGTTCATATAACTTTTGTGTCCCTCCATAATGGTGGCAATGATCTCAAACGAATTCGGTTCAGCCGAGAGATGTTCAATAAATTTGAAGCTCAAAAATGGTGGGGTGAAAATTATGACCGGATTATGGAGCTGTACAATGTTCAAAGATTCAATCGCCAAGCTATGAGCACTCCTGCAAGGTCTGAGGACGAGGACCTATTGAAACTGCAGCATAGAGATTCTTCCTACACAACGTTAGGTTCAGAAAGGGAGAGCCCTATGCCCCCATCCTGGACACCAAGACAATACTGCAGACCCACTGGAAGTAGGGGGTACTATCCCTCTGACCATTTACAGCAAGGCAGTGGGCACAATTTCCATGGAGGATCCAGTGCTTATGGAGGGGCAGGTGGTCCTAGACGTGAGGCATCATTTCTTGAAGCATCAAGGACCACAACAGACTCAAGAGACGAGCCTTCAGTCTCTGTGAGCAATGCCAGTGATGTTGAGGCGGAATGGATTGAGCAAGATGAGCCTGGTGTTTATATAACTATTAGGCAGCTAGCCGATGTCGAGAAAGATTTGGTGAGGTGA 1026 0.4678 MFTCIACSKQAVEDGGDEGGAGESGTPNTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYRKGQRPYYPDFDTISEGVPYPYYGGASSSSTPAWDFTAGSHQLIRKTDNRFTTVFTGDNTPRASGLSCDVVLEDEDVPKEWMAQVEPGVHITFVSLHNGGNDLKRIRFSREMFNKFEAQKWWGENYDRIMELYNVQRFNRQAMSTPARSEDEDLLKLQHRDSSYTTLGSERESPMPPSWTPRQYCRPTGSRGYYPSDHLQQGSGHNFHGGSSAYGGAGGPRREASFLEASRTTTDSRDEPSVSVSNASDVEAEWIEQDEPGVYITIRQLADVEKDLVR* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00617 341 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Pte12g00617 341 ProSiteProfiles BRX domain profile. 315 341 IPR013591 -
Pte12g00617 341 Pfam Transcription factor regulating root and shoot growth via Pin3 314 339 IPR013591 -
Pte12g00617 341 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Pte12g00617 341 MobiDBLite consensus disorder prediction 290 313 - -
Pte12g00617 341 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 341 IPR044532 -
Pte12g00617 341 MobiDBLite consensus disorder prediction 227 316 - -
Pte12g00617 341 MobiDBLite consensus disorder prediction 257 271 - -
Pte12g00617 341 Pfam Transcription factor BRX N-terminal domain 24 57 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00617 Pte-Chr12 5592672 5595572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00617 1 341 Major Intrinsic Protein MIP AT1G31880 60.345 1.49e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00617 - - qsa:O6P43_025069 495.352