Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00614 ATGGCTGTGAATCTGAGTGAAGGAGTGATAGAAGCGATGTCGAGGCAAGACGGTAGTTGCGACAATCTGCAACCTTTGCTTCAAGTGATTGACTTGAAGTTGGTTCAGTCACAGCAAACTACAACTACGGAGAGGTACCGAGTCGTGCTTTCCGATGGAAAACACTATCAACAAGGGATGCTTGCTACCCAGAAGAACGAGTTGGTCAAATCTGGAGAATTGACTAAAGGTTCTGTTGTTCAGTTGACTCAGTTCATCTGCAATGTCGTTCAGAGCCGCACGATTATCATTGTCATTGACCTGAACGTCATCCTTTCAGCATGTCCTCAAATTGGAGAACCCATACCAGCGACAAAACTTACTCCTACGCAAACTTCTACAGATAAACCTGGAACTTTGACTGGGAACCCCCCACCTGTTTCAGGCAGTTCACCTGTGAGTAGTGTGCAAACTAGACCAACTACAGACAGATCATCTATAGATCATTCAGTCACAAATCAGCCTCGCAGTAGTGTTCATTCGGGTAATGCTGAAATTGGAAGATACGGTCCAAATGCACCACCTTCTTACTCTAAAGCTGGGCCTAATATTTCTAAAGTTGAATATGGCCACCAAAACATGTGTTACCAAAATCCCAATTCAGAAGTTCAAAAACAACCTTCAAATCCTTACCCACCTCAGCCTGCATACAGACATCCTGCTCCAATCTATACCAACAGAGGGCCAATAGCTAAAAATGAGGCTCCTGTCAGGATTATTCCAATTGCTGCTTTAAATCCGTACCAAAGTATGTGGACAATCAAGGCAAGGGTAACTGCAAAGGGAGAACTTCGGCATTATAATAATCCTCGTGGTGGTGAGGGTAAAGTATTCTCTTTTGATCTTCTTGATTCCGATGGTGGAGAGATCCGGGCCACTTGCTTTAATGCTGTAGCTGATCAGTTCTACAATCTTATTGAACCTGGTAAAGTGTATACGATTTCTAGGGGAAGTATAAAACCAGCTCAGAAGAATTTTAACCATCTCCGAAATGATCAAGAGCTGTCTCTGGATACTACATCTGTCATACAGCCTTGTTTTGATGATGACAACTCAATTCCAAAGCAGCAGTTCCATTTCCGTTCCATAAATGATATAGAGCATATGGACAACAACAGTATTGTAGATGTAATTGGTGTTGTATCAGCTATTAGTCCAACGAGTTCAATAATGAGGAAAAATGGTACTGAAACACAGCGAAGAGTACTCCACTTAAAAGATGACTCTGGAAAAAGTATGGAGTTGACTCTGTGGGGATCTTTTTGTAATGCTGAAGGACAGAGATTACAAAGCATGTGCGATTCTGGGGTATATCCAGTTCTTGCAATAAAATCTGGCAGAGTCAATGATTTCAACGGGAAAGCAGTAGGGACCATGTACACAAGCCAGCTATTTATTGAGCCTGATTCTCCAGAGGCTTACAAGTTGAAGGAGTGGTTTGATAGGGTAGGGAGGAATAGTTCATCTGTATCTATTTCCAGAGAAGTTTCAAGTATGGGTAGAGCTGATGTTAGAAAGACTATATCTCAGATCAAAGATGAAAAGTTAGGAACATCTGAGAAGCCAGATTGGATTTCTGTTTGTGCCAGTATTTCATTCATTAAATTTGATAACTTCTGCTACACAGCTTGTCCGATTATGATTGGGGATAGACAATGCAATAAAAAAGTCACCAACAATGGAGATGGGAAATGGCGTTGTGATAGGTGTGATCAGTCCGCAGACACGTGTGACTACAGGTACATACTGCAATTTCAGATTCAAGACCACACAGGCTTGACATGGGTAACTGCATTTCAGGAGTGTGGTGAGGAGATAATGGGTATATCTGCCAAAAACTTGTTCTATCTGAAGTATGAAGAACAAGATGATGAGAAGTTTGCTGAAATCTTCCGGAAGGTTCTTTTCACTAAATACTTGCTGAAGTTAAAAATAAAGGAGGAGACATTCAGTGATGAACAGCGTGTAAAGTCTACTGTTGTCAAAGCAGAGAAGGTGGAATTTTCAACCGAATCGAAGTTTCTTCTGGATTTAATTGATAAGCTTAAAGTTGAAAAACCAGGAAATGCCATCCACCAGCCTTCTATGGATAATGTTGGATTTGGAAATGCTGGTAATAGACAACCTACATATAATCCTACTATGATAAACAATACTGGCAGTAGAGAATATGGGATTTCAGCAAATCAAGTGAGTCCTTACAGAAACCAGATCAACAATTCTTTTCAGGCTTCTGGTTCCTATCTATCGTGCAATAACTGTGGAGGTATGGGTCACAGCTCTTCAAATTGCCCAAGCATGTATAGTGGTCCAGGGCTGTCTACTGGAGGAGGCTATACGAATAGGGTATCATCTGGGCTTGGTACTAGCGGTCCATCTGGTCAATGCTTCAAATGCCATCAGTCTGGGCACTGGGCTAAGGACTGCCCAGGTGTCAGCACAGTTCCTCCGGCTTATGGAAGTGGGAGCTACGGAAGTGGTCAAAGACAACAGATCGGTGGGTTTTGA 2547 0.4209 MAVNLSEGVIEAMSRQDGSCDNLQPLLQVIDLKLVQSQQTTTTERYRVVLSDGKHYQQGMLATQKNELVKSGELTKGSVVQLTQFICNVVQSRTIIIVIDLNVILSACPQIGEPIPATKLTPTQTSTDKPGTLTGNPPPVSGSSPVSSVQTRPTTDRSSIDHSVTNQPRSSVHSGNAEIGRYGPNAPPSYSKAGPNISKVEYGHQNMCYQNPNSEVQKQPSNPYPPQPAYRHPAPIYTNRGPIAKNEAPVRIIPIAALNPYQSMWTIKARVTAKGELRHYNNPRGGEGKVFSFDLLDSDGGEIRATCFNAVADQFYNLIEPGKVYTISRGSIKPAQKNFNHLRNDQELSLDTTSVIQPCFDDDNSIPKQQFHFRSINDIEHMDNNSIVDVIGVVSAISPTSSIMRKNGTETQRRVLHLKDDSGKSMELTLWGSFCNAEGQRLQSMCDSGVYPVLAIKSGRVNDFNGKAVGTMYTSQLFIEPDSPEAYKLKEWFDRVGRNSSSVSISREVSSMGRADVRKTISQIKDEKLGTSEKPDWISVCASISFIKFDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSADTCDYRYILQFQIQDHTGLTWVTAFQECGEEIMGISAKNLFYLKYEEQDDEKFAEIFRKVLFTKYLLKLKIKEETFSDEQRVKSTVVKAEKVEFSTESKFLLDLIDKLKVEKPGNAIHQPSMDNVGFGNAGNRQPTYNPTMINNTGSREYGISANQVSPYRNQINNSFQASGSYLSCNNCGGMGHSSSNCPSMYSGPGLSTGGGYTNRVSSGLGTSGPSGQCFKCHQSGHWAKDCPGVSTVPPAYGSGSYGSGQRQQIGGF* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00614 848 CDD RPA1_DBD_A 254 358 - -
Pte12g00614 848 FunFam Replication protein A subunit 504 695 - -
Pte12g00614 848 Pfam Replication factor-A C terminal domain 537 688 IPR013955 -
Pte12g00614 848 Pfam OB-fold nucleic acid binding domain 265 350 IPR004365 GO:0003676
Pte12g00614 848 FunFam Replication protein A subunit 251 362 - -
Pte12g00614 848 SUPERFAMILY Nucleic acid-binding proteins 371 499 IPR012340 -
Pte12g00614 848 NCBIfam replication factor-a protein 1 (rpa1) 211 694 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte12g00614 848 SUPERFAMILY Retrovirus zinc finger-like domains 796 827 IPR036875 GO:0003676|GO:0008270
Pte12g00614 848 SMART c2hcfinal6 763 779 IPR001878 GO:0003676|GO:0008270
Pte12g00614 848 SMART c2hcfinal6 808 824 IPR001878 GO:0003676|GO:0008270
Pte12g00614 848 SUPERFAMILY Nucleic acid-binding proteins 518 695 IPR012340 -
Pte12g00614 848 Pfam Replication protein A OB domain 376 479 IPR031657 -
Pte12g00614 848 Gene3D - 250 362 IPR012340 -
Pte12g00614 848 Pfam Replication factor-A protein 1, N-terminal domain 5 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pte12g00614 848 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pte12g00614 848 Gene3D - 752 825 - -
Pte12g00614 848 SUPERFAMILY Nucleic acid-binding proteins 251 366 IPR012340 -
Pte12g00614 848 FunFam Replication protein A subunit 4 118 - -
Pte12g00614 848 CDD RPA1_DBD_B 387 494 - -
Pte12g00614 848 PANTHER REPLICATION FACTOR A 1, RFA1 265 687 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pte12g00614 848 Pfam Zinc knuckle 764 779 IPR001878 GO:0003676|GO:0008270
Pte12g00614 848 Pfam Zinc knuckle 808 823 IPR001878 GO:0003676|GO:0008270
Pte12g00614 848 FunFam Replication protein A subunit 365 503 - -
Pte12g00614 848 Gene3D - 504 695 IPR012340 -
Pte12g00614 848 ProSiteProfiles Zinc finger CCHC-type profile. 809 823 IPR001878 GO:0003676|GO:0008270
Pte12g00614 848 Gene3D - 3 118 IPR012340 -
Pte12g00614 848 CDD RPA1_DBD_C 521 694 IPR047192 -
Pte12g00614 848 Gene3D - 364 503 IPR012340 -
Pte12g00614 848 ProSiteProfiles Zinc finger CCHC-type profile. 764 779 IPR001878 GO:0003676|GO:0008270
Pte12g00614 848 MobiDBLite consensus disorder prediction 117 174 - -
Pte12g00614 848 SUPERFAMILY Retrovirus zinc finger-like domains 754 824 IPR036875 GO:0003676|GO:0008270
Pte12g00614 848 SUPERFAMILY Nucleic acid-binding proteins 1 112 IPR012340 -
Pte12g00614 848 MobiDBLite consensus disorder prediction 114 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00614 Pte-Chr12 5567256 5571658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00614 1 791 Core DNA Replication Machinery Family AT5G45400 50.820 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00614 K07466 - qsa:O6P43_033421 1184.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00614 12 5567256 5571658 Pte12g00614 12 5567256 5571658 RCT