Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00611 ATGGAATCAGAAGGGTTTAAGGAGACACTGACGGTTCGAGAAATCTGTGCTAATGGGAGTTGTATGAAAACGAACGAAGTTGAGGCTAAGCTAGATGAAGGAAACATTCAAGAGGCAGAATCATCTTTGCGTGAAGCTTTATCGCTTAACTCTGAGGAAGCAAGAGCTCTTCTGGGAAAGTTAGAATATCAGAGAGGTAATTTGGAGGGTGCTCTTAGAGTGTTTGATGGAATCGATCTCCTTGCCGCTGTCCAGAGATTGCAATCTGCCGTTGGTGAAAAGCCATCACTGAAAAAGGGCCGTCGCTCTGAATCAGTTTCAACATCACACCATGCTGCTGGGCTGGTGCTCGAAGCCATATACCTGAAAGCAAAGGCCCTTCAAAAGCTTGGGAGATCAAGTGAGGCTGCTGACGAGTGCAATAGTGTAATTGATGCTGTGGAGAAGATATTTTCCCAGGGAATGGCTGAGGCTCAAGTTGATATGAAGCTGCAAGAGATAATCAGCAAAGCTGTAGAGCTTCTTCCAGAGTTATGGAAGCAGGCTGGTTCACATCAAGAAGCAATATCTGCTTACAGGCGTGCCCTTCTTGGTCAGTGGAACCTTGAAAATGATTGTAGTGCTAGGATTCAAAAAGCATTTGCCGTGTTTTTACTGTATAGTGGAGTGGACGCTAACCCACCTAGCTTAGCAGTTCAGGTCGAGGGGTCATACGTGCCTAAGAATAATCTGGAAGAAGCAATTTTGCTTTTGATGATTCTTATGAGAAAGTTTATTCTTGGAAAAACCAAATGGGATTCATCAGTAATTGAGCACCTGACTTATGCACTTTCTATATGTAGTCAAACTTCTATTTTGGGTAAGCAATTAGAGGAGCTGATCCCAGGAACTTTGCATCGTGCTGAACGCTGGAACTTGTTAGCTTTATGCTATAATGGGGCAGGACAAAACAAGTATGCCTTAAATTTATTGAGGAAGTCGTTGCATAAACATGAAAGACCAGATGATTTAATGGCATTGCTATTGTCTGCCAAGATCTGCAGTGAGGATCCATATCTTGCTTCTGAGGGAGTGAATTATGCAAGAAGGGCAATTAATATTGCTAAGGAAACCAATGGACATTTAAAGGGTGTAGGACTTCGGATGTTAGGGTCATGCCTGGCAAAGCAAGCTGAAGTTTCTTCCTCTGATTTTCAAAGGTCTCAACTTCAGTCTGGAGCACTAAAATCATTTGACGAGGCAATGGTTTTGGAGGGTGGTAATCCAGATCTGATTTTTGAGTTGGCGGTTCAATATTCAGAACTCAGAAATTTGAATCCTGCATTGCGCTATGCCAAGCAATTCATAGATGAAACAGGCGGTTCGGTATTGAAGGGTTGGAAATTGCTTGCATTGATTTTGTCTGCTAAACAGCTATTTTCGGAGGCTGAAGTTATAAATGATGCGGCATTGGATGAGACATCAAAATGGGAGCAAGGGCCACTGCTCAGATTGAAGGCAAAGCTTAAGATGTCCCAGTCACGACCAATGGATGCTATTGAAACTTATCGATACCTACTTGCTCTAGTTCAAGCCCATAAAAAATCCTTTGGGCCTCAAAAAACTACTTCTCAGGTAGAAGACAACAACATAGATGAATTTGAAGTTTGGCACGGTCTTTCGACCTTGTATTCAAGCCTTTCCTACTGGAAAGATGCTGAAGTATGTTTGCAAAAAGCCAGAGAGTTGAGGCTATACTCTGCAGCAACACATCATACAGAAGGTGTTATTTCTGAAGGACGTGGACAGATTGAAGAAGCTATTTGTGCCTATTGTAATGGCTTATTATTAGATTCTGGTCATGTTCCGTGCAAAGTTTGGCTTGGTGGCTTGATGTTGAAGACAATGGGCTCAAAGGCTTTGCCTGTGGCAAGAAGCTTGCTCTCTGATTCACTAAGGATAGATCCAACCAACCGTTTCGCTTGGTATTACTTAGGAATGGCTCATAAAAATGATGGACATATAGCTCATGCTGCAGACTGCTTTCAGGCAGCATCCCTGCTTGAAGAATCTAATCCGATTGAAAGCTTCACAGCTGCCGTTTGA 2085 0.4278 MESEGFKETLTVREICANGSCMKTNEVEAKLDEGNIQEAESSLREALSLNSEEARALLGKLEYQRGNLEGALRVFDGIDLLAAVQRLQSAVGEKPSLKKGRRSESVSTSHHAAGLVLEAIYLKAKALQKLGRSSEAADECNSVIDAVEKIFSQGMAEAQVDMKLQEIISKAVELLPELWKQAGSHQEAISAYRRALLGQWNLENDCSARIQKAFAVFLLYSGVDANPPSLAVQVEGSYVPKNNLEEAILLLMILMRKFILGKTKWDSSVIEHLTYALSICSQTSILGKQLEELIPGTLHRAERWNLLALCYNGAGQNKYALNLLRKSLHKHERPDDLMALLLSAKICSEDPYLASEGVNYARRAINIAKETNGHLKGVGLRMLGSCLAKQAEVSSSDFQRSQLQSGALKSFDEAMVLEGGNPDLIFELAVQYSELRNLNPALRYAKQFIDETGGSVLKGWKLLALILSAKQLFSEAEVINDAALDETSKWEQGPLLRLKAKLKMSQSRPMDAIETYRYLLALVQAHKKSFGPQKTTSQVEDNNIDEFEVWHGLSTLYSSLSYWKDAEVCLQKARELRLYSAATHHTEGVISEGRGQIEEAICAYCNGLLLDSGHVPCKVWLGGLMLKTMGSKALPVARSLLSDSLRIDPTNRFAWYYLGMAHKNDGHIAHAADCFQAASLLEESNPIESFTAAV* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00611 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Pte12g00611 694 SMART tpr_5 117 150 IPR019734 GO:0005515
Pte12g00611 694 SMART tpr_5 20 53 IPR019734 GO:0005515
Pte12g00611 694 SMART tpr_5 547 580 IPR019734 GO:0005515
Pte12g00611 694 SMART tpr_5 301 334 IPR019734 GO:0005515
Pte12g00611 694 SMART tpr_5 493 526 IPR019734 GO:0005515
Pte12g00611 694 SMART tpr_5 581 614 IPR019734 GO:0005515
Pte12g00611 694 Gene3D Tetratricopeptide repeat domain 165 533 IPR011990 GO:0005515
Pte12g00611 694 SUPERFAMILY TPR-like 117 443 IPR011990 GO:0005515
Pte12g00611 694 Gene3D - 621 687 - -
Pte12g00611 694 PANTHER PROTEIN NPG1 6 690 IPR043376 -
Pte12g00611 694 SUPERFAMILY TPR-like 496 685 IPR011990 GO:0005515
Pte12g00611 694 Gene3D Tetratricopeptide repeat domain 25 164 IPR011990 GO:0005515
Pte12g00611 694 SUPERFAMILY TPR-like 31 197 IPR011990 GO:0005515
Pte12g00611 694 Gene3D Tetratricopeptide repeat domain 534 620 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00611 Pte-Chr12 5537246 5542209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00611 8 695 Calmodulin-binding Proteins AT2G43040 70.231 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00611 K21843 - mnt:21395915 1002.28