Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00609 ATGGTGAAGCATAACAACGTTATCCCAAATGGGCACTTCCGTAAGCATTGGCAAAACTATGTGAAAACTTGGTTCAATCAACCAGCCAGGAAGACAAGGAGACGGTTAGCTCGCCAGAAGAAAGCTGTTCACACTTTCCCAAGGCCTGCTGATTGTCTCAGACCGATTGTTCATGGGCAAACGTTAAAGTACAACATGAAAATTAGAGCCGGGAGAGGATTCTCTTTGGAAGAACTGAAGGCTGCTGGCATTCCCAAAAAGTTAGCACCAACCATTGGCATTTCTGTTGATCATCGGCGCAGAAACTGTTCTTTGGAAGGTCTTCAAGCTAATGTCCAGAGGCTGAAGACATACAAGGCTAAATTGGTTGTGTTCCCAAGGCGTCCAAAGAAGTTCAAGGCTGGTGATTCCTCTCCGGAGGAACTTGCCAATGCCACCCAAGTGCAGGGTGACTACATGCCCATTGTTAGAGAGAAGCCAACTGTGGAGCTTGTCAAAGTTACTAATGAGATGAAGTCGTTTAAGGCTTATGCCAAGCTCCGTCTAGAGCGGACAAACCAGCGTCACGTCGGTGCTAGGTTGAAGAAGGCTGCTGAAGCTGAAAAGGAAGATAAGAAATAG 621 0.467 MVKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVHTFPRPADCLRPIVHGQTLKYNMKIRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNCSLEGLQANVQRLKTYKAKLVVFPRRPKKFKAGDSSPEELANATQVQGDYMPIVREKPTVELVKVTNEMKSFKAYAKLRLERTNQRHVGARLKKAAEAEKEDKK* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00609 206 ProSitePatterns Ribosomal protein L13e signature. 69 83 IPR018256 GO:0003735|GO:0005840|GO:0006412
Pte12g00609 206 Gene3D - 166 206 - -
Pte12g00609 206 PANTHER 60S RIBOSOMAL PROTEIN L13 1 206 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pte12g00609 206 Pfam Ribosomal protein L13e 7 184 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pte12g00609 206 Hamap 50S ribosomal protein L13e [rpl13e]. 45 127 IPR001380 GO:0003735|GO:0005840|GO:0006412
Pte12g00609 206 FunFam 60S ribosomal protein L13 165 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00609 Pte-Chr12 5512564 5513952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00609 2 191 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 82.723 5.32e-120 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00609 K02873 - rvl:131319923 352.829