Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00606 ATGGAAACGGAAGAGATATTGCAGGAGCTGTTGAATGTAGAGTTTGAGCTTCAAGATATTCAAGAACAAGTTAAGGCGTTGCTTGAACGGCAAGAGAAGTTGTATGAGAGACAGTCCGAGCTGAAGGAACTGCTTGAAGTTTGTAAAGGATTAGAAAATCATGGGGAAGTTGGTTCTTCAGCAAGCATGGAAAGCTGGTCTGGTCCCTTTGAATGGGATTCTGAAGCTGATGATGTCAGATTAAATATTTTTGGGATTTCTAATTACCGTGCAAATCAAAGAGAGATAATTAATGCTATCATGAGTAGAAGAGATATTCTAGTCATTATGGCTGCAGGTGGTGGGAAAAGCTTGTGTTACCAGCTACCTGCAGTTCTTCGTGATGGAATTGCTCTTGTTATCAGTCCTCTTCTTTCTTTAATTCAAGATCAGGTGATGGGTCTAACTGCTTTAGGAATCCAAGCAAATATGTTAACATCTACTACAAGTAAGGAGGATGAAAAATTTATATACAAGGCTCTGGAAAAGGGTGAGGGAGGACTCAAAGTGCTCTATGTCACTCCAGAAAAGATATCAAAGAGCAAGAGATTTATGTCAAAACTTGAAAAGTGTCATCACGCTGGTCGTCTCTCTCTAATTGCAGTTGATGAAGCACATTGCTGTAGTCAGTGGGGTCATGACTTTCGACCTGATTACAAGAATCTCGGTATTCTCAAGACACAGTTTCCTAATGTTCCACTTGTTGCTCTTACTGCAACTGCTACCCAAAGAGTGCAAAATGATTTAATGGATATGCTTCACATTCCAAAATGTGTTAAATTTGTCAGCACTGTAAACAGGCCAAATCTCTTTTACATGGTACGGGAAAAGTCCTCCATTGCAAAGGTAGTTGTCGATGAAATTGCTACTTTCATCCGAGATTCCTATCCAAATAAAGAATCTGGAATAGTATATTGCTTCTCTAGAAAAGAATGTGAGCAGGTTGCTAAGGAATTACGTGATAGGGGAATCTCAGCTGACTATTATCATGCCGATATGGATGTAAATGCTCGGGAAAAAGTGCATATGCGGTGGAGTAGCAACAAGTTGCAAGTTATTGTTGGTACGGTGGCTTTTGGCATGGGAATCAACAAACCTGATGTCAGGTTTGTCATCCACCACAGCTTGAGTAAATCAATGGAAACATATTATCAGGAAAGTGGCCGGGCTGGACGAGATGGACTTCCTTCTGAATGCCTGCTTTACTTCAGACCTGGTGATGTTCCTCGACAGAGTTCTATGGTCTTCTATGAAAATTCTGGGCTGCAGAACCTCTATGATATAGTACGATATTGTCAGTCCAAAAAAGTATGCCGCCGAAGTGCCTTTTTTAGGCATTTTGCTGAGCCATTACAAGATTGCAATGGGATGTGTGACAATTGTGCATTATCCAGTGAAGTGAATGAAGTAGATGTCACATGTCATGCAAAAGCCATAGTGTCCTTCTTGCAAGATGTTCAGGCAAATGATCAGAGAGTAACAATGTTGCAATTGGTTGACAAAATGAAAATAAAGCAGAAAGGACTAGGTTCCGAATTGAGAAAAGAGGAATTAGAACAACTGGTCATACATCTTCTGCTAGAGCGAGTTTTGAAAGAAGACTTTCAGCATACAGCATATGCAACAAATGCTTATGTATCTGTTGGGCCATTTTGCAAGCTAGTGTTGCAAGGGAAGAAGAATGTGAAGCTTGAAACTTCTTGTGGACCGAAGAATACTCCTCGTGTCAAGTCAGCTAAGCGAATGCATGAGTATTCTGCATTGGAACTTAAGCTTGATGAGCTGCGCAAACAATTGGCTTCAGATCATGGGGGTATACTGCCACATTCTGTTTTGTCTACTCAGCAGATTAGCATCATAGCTTCTCAGAAACCAAATTCATTCAAAGAGTTGGAGATGATAATTGGAAAATTGAAGACCGAGAAGTATGGAAAGAACATCCTTGAAGCTATCAACAAATACTCTGGTGATGGGTCTCATGAGAACAATGAAGAGCAAATAAATGAAGTTAGAGCTGCGAAAAGATTGAAACATAAGAGGGTCGTTCTTATTGAGAGTAGTGACGAAGGGGCATAA 2115 0.4038 METEEILQELLNVEFELQDIQEQVKALLERQEKLYERQSELKELLEVCKGLENHGEVGSSASMESWSGPFEWDSEADDVRLNIFGISNYRANQREIINAIMSRRDILVIMAAGGGKSLCYQLPAVLRDGIALVISPLLSLIQDQVMGLTALGIQANMLTSTTSKEDEKFIYKALEKGEGGLKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLIAVDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPLVALTATATQRVQNDLMDMLHIPKCVKFVSTVNRPNLFYMVREKSSIAKVVVDEIATFIRDSYPNKESGIVYCFSRKECEQVAKELRDRGISADYYHADMDVNAREKVHMRWSSNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKKVCRRSAFFRHFAEPLQDCNGMCDNCALSSEVNEVDVTCHAKAIVSFLQDVQANDQRVTMLQLVDKMKIKQKGLGSELRKEELEQLVIHLLLERVLKEDFQHTAYATNAYVSVGPFCKLVLQGKKNVKLETSCGPKNTPRVKSAKRMHEYSALELKLDELRKQLASDHGGILPHSVLSTQQISIIASQKPNSFKELEMIIGKLKTEKYGKNILEAINKYSGDGSHENNEEQINEVRAAKRLKHKRVVLIESSDEGA* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00606 704 Gene3D HRDC domain 598 668 IPR044876 -
Pte12g00606 704 SMART ultradead3 85 288 IPR014001 -
Pte12g00606 704 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676|GO:0005524
Pte12g00606 704 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Pte12g00606 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 423 IPR027417 -
Pte12g00606 704 CDD SF2_C_RecQ 280 416 - -
Pte12g00606 704 Coils Coil 3 37 - -
Pte12g00606 704 FunFam ATP-dependent DNA helicase 599 669 - -
Pte12g00606 704 Pfam HRDC domain 604 664 IPR002121 GO:0003676
Pte12g00606 704 CDD DEXHc_RecQ1 71 279 - -
Pte12g00606 704 Gene3D - 280 476 IPR027417 -
Pte12g00606 704 NCBIfam RecQ family ATP-dependent DNA helicase 82 509 IPR004589 GO:0004386|GO:0006310
Pte12g00606 704 ProSiteProfiles HRDC domain profile. 595 674 IPR002121 GO:0003676
Pte12g00606 704 Pfam RecQ zinc-binding 419 475 IPR032284 -
Pte12g00606 704 Gene3D - 480 580 IPR036388 -
Pte12g00606 704 SMART helicmild6 326 407 IPR001650 -
Pte12g00606 704 Pfam RQC domain 481 579 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pte12g00606 704 FunFam ATP-dependent DNA helicase 480 580 - -
Pte12g00606 704 FunFam ATP-dependent DNA helicase 48 279 - -
Pte12g00606 704 SUPERFAMILY HRDC-like 600 668 IPR010997 GO:0000166|GO:0044237
Pte12g00606 704 SMART RQC_2 484 581 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pte12g00606 704 Pfam Helicase conserved C-terminal domain 311 406 IPR001650 -
Pte12g00606 704 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 661 - -
Pte12g00606 704 FunFam ATP-dependent DNA helicase 280 476 - -
Pte12g00606 704 Gene3D - 51 279 IPR027417 -
Pte12g00606 704 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00606 Pte-Chr12 5493039 5502051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00606 84 421 Eukaryotic Initiation Factors Gene Family AT3G19760 20.168 1.19e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00606 K10899 - jre:109003363 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00606 12 5493039 5502051 Pte12g00606 12 5493039 5502051 RCT