Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00587 ATGGTTTGTCCAGGAGAGATACTGGCTATGTTAGGTCCATCTGGAAGTGGAAAGACAACCCTTCTTACAGCTCTTGGTGGTCGACTCACCCGAAAATTATCCGGGAAGATCACATACAATGGTCAGCCATTCTCAGGTCCCATGAAAAGATTAACAGGTTTTGTTGCCCAGGATGATGTCTTGTACCCCCATCTGACTGTCACTGAAACTCTAGTCTTCACTGCACTGCTAAGACTTCCTAAAGGCTTGACCAATGATGAGAAGATTCAGCATGTAGAGAGAGTCATCACTGAGCTTGGATTGTCTAAGTGCAGAAACAGCATGATAGGGGGGCCACTGTTCAGAGGAATATCAGGTGGGGAGAAGAAGAGAGTGAGCATAGGACAGGAAATGCTAATTAATCCTAGTTTACTTTTACTAGACGAGCCTACTTCAGGTTTGGATTCAACCACAGCTCAAAGGATCATGACCACAGTGAAAAGGTTGGCCAATGGTGGCAGAACTGTAGTCACCACTATCCATCAACCATCTAGCCGTCTATACTATATGTTTGATAAAGTGTTATTGCTCTCTGAAGGGTGCCCCATCTATTATGGTTCTGCTTTAGCAGCCCTGGATTATTTTTCATCAATTGGTTTTTCTACAGCCTTGACTGTCAATCCTGCAGACCTCTTACTTGACCTCGCCAATGGGATTGCTCCAGATTCTAAGCAAGCAACTGAGCAAAGTGAGAGCACAGAGCAAGAACGGAAACTGGTTAAGGAAGCTCTTATCTCTGCTTATCACAAGAACATCTCAACAACGCTGCAAGCTGAGCTTTGCAGTACAGAGGTGAATAAAAACAGTATCAGCAAAGATGTTCCTGCAAGAGGAGTTAACATAAATTCAGAACAATGGAGCACAAGCTGGTGGCAACAGTTCAAGGTGTTGTTACAGAGGGGTGTTAGAGAAAGAAGGTATGAAGCCTTCAACAAGCTGAGAATATTCCAAGTCCTAAGTGTTGCATTTCTTGGTGGACTCTTATGGTGGCGTACTCCAGAATCTCACATTGGAGACCGGATAGCGTTACTGTTCTTCTTCTCTGTGTTCTGGGGCTTCTATCCACTCTACAATGCTGTTTTCACATTCCCTCAAGAAAGGAAAATGTTGATCAAGGAAAGGTCATCAGGGATGTACCGCCTTTCTTCCTACTTTCTTGCTAGAACAGTAGGAGACCTGCCATTGGAGCTTGCTCTACCAACTTCATTTGTATTCATTATGTACTGGATGGGAGGGCTAAAACCCCATCCTGTCACTTTCATCCTTTCTTTGCTCGTGGTACTTTACAGTGTCCTTGTATCTCAGAGTCTTGGCTTAGCCGTTGGTGCTATACTGATGGATGTTAAGCAAGCTACTACATTGGCTTCTGTGACAACTCTTGTGTTCCTCATTGCTGGAGGGTACTATGTACAACAAATCCCTCCTTTTATAGCTTGGTTCAAGTACTTCAGTTACAGCTACTACAGCTACAAACTTCTTCTCGGGGTTCAATACAATGAGAATGATCACTATGAGTGCTCAAAAGGAGTTTGGTGCAAAGTTGTGGACTTTCCTGGCATCAGAACAATGGGTCTAAATCATTTGTGGGTAGATGTATTCGTCATGGCTCTTATGTTGGTGGGGTATAGATTCATTGCTTACTTGGCTTTACAGAGAGTGAGGTAA 1704 0.4372 MVCPGEILAMLGPSGSGKTTLLTALGGRLTRKLSGKITYNGQPFSGPMKRLTGFVAQDDVLYPHLTVTETLVFTALLRLPKGLTNDEKIQHVERVITELGLSKCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRIMTTVKRLANGGRTVVTTIHQPSSRLYYMFDKVLLLSEGCPIYYGSALAALDYFSSIGFSTALTVNPADLLLDLANGIAPDSKQATEQSESTEQERKLVKEALISAYHKNISTTLQAELCSTEVNKNSISKDVPARGVNINSEQWSTSWWQQFKVLLQRGVRERRYEAFNKLRIFQVLSVAFLGGLLWWRTPESHIGDRIALLFFFSVFWGFYPLYNAVFTFPQERKMLIKERSSGMYRLSSYFLARTVGDLPLELALPTSFVFIMYWMGGLKPHPVTFILSLLVVLYSVLVSQSLGLAVGAILMDVKQATTLASVTTLVFLIAGGYYVQQIPPFIAWFKYFSYSYYSYKLLLGVQYNENDHYECSKGVWCKVVDFPGIRTMGLNHLWVDVFVMALMLVGYRFIAYLALQRVR* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00587 567 Pfam ABC-2 type transporter 174 271 IPR043926 GO:0140359
Pte12g00587 567 CDD ABCG_EPDR 4 199 - -
Pte12g00587 567 Gene3D - 1 210 IPR027417 -
Pte12g00587 567 SMART AAA_5 4 194 IPR003593 GO:0016887
Pte12g00587 567 FunFam ABC transporter G family member 22 1 211 - -
Pte12g00587 567 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 560 - -
Pte12g00587 567 Pfam ABC-2 type transporter 305 511 IPR013525 GO:0016020|GO:0140359
Pte12g00587 567 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 217 IPR003439 GO:0005524
Pte12g00587 567 Pfam ABC transporter 4 145 IPR003439 GO:0005524
Pte12g00587 567 ProSitePatterns ABC transporters family signature. 117 131 IPR017871 GO:0005524|GO:0016887
Pte12g00587 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 209 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00587 Pte-Chr12 5270533 5272724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00587 2 193 Calmodulin-binding Proteins AT2G36910 30.198 1.60e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00587 K05681 - qsa:O6P43_025010 928.702