Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00583 ATGTTCGTTAGGCATTTGCGAAATCCCAAAAGACAAGGGCCTTTTTTAAGCGATATCAGGTCAAGTTCAAGAGAAGAAGAGACAAACAAAGATGTAACTGCTCAAATTATATCTGCCAGCATTGCTGGTGATTTGGTGCTTGCTTCTGCTTATTCGCATGAGCTTCCTCGCTATGGTCTTAAAGTTGGTCTGACAAACTATGCTGCAGCCTATTGTACCGGTCTTCTTCTAGCTCGTCGTGTGTTGAAGAAGCTTGAAATGGATGATGAATATGAAGGGAATGTTGAGGCTACTGGAGAAGATTTCTCAGTTGAACCAACAGAGAATAGGCGTCCTTTCAGAGCACTTCTTGACGTCGGTCTTATCAGGACAACAACTGGAAACCGTGTTTTTGGTGCCCTCAAGGTATTCACGTTTAATGCATAG 426 0.4296 MFVRHLRNPKRQGPFLSDIRSSSREEETNKDVTAQIISASIAGDLVLASAYSHELPRYGLKVGLTNYAAAYCTGLLLARRVLKKLEMDDEYEGNVEATGEDFSVEPTENRRPFRALLDVGLIRTTTGNRVFGALKVFTFNA* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00583 141 PRINTS Ribosomal protein L5 signature 116 135 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pte12g00583 141 PRINTS Ribosomal protein L5 signature 56 76 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pte12g00583 141 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 28 135 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pte12g00583 141 MobiDBLite consensus disorder prediction 1 27 - -
Pte12g00583 141 Gene3D - 26 138 - -
Pte12g00583 141 PANTHER RIBOSOMAL PROTEIN L5-RELATED 28 135 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Pte12g00583 141 CDD Ribosomal_L18_L5e 4 135 - -
Pte12g00583 141 SUPERFAMILY Translational machinery components 28 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00583 Pte-Chr12 5217131 5219349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00583 28 135 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 89.815 1.87e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00583 K02932 - dcr:108196794 204.142