Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00578 ATGGGTCCAACTCAACTTCTGAACCTCTGTTTTTCTCTTATCGCCACTATCATACTTCTCTACCAAACACATATTTCAGAAGCTCAAACTAAAACCAATTCTTTTGTGTTTGGACCTTTTAACGCTTCATACTACAATACTTTCGATGTTATACAGCCAGCTGCAATAAACAACGAAGCACTGCAGGTAACTCCTGACTCCGTTGGAAACTTCAGTCTTACAAACAATTCTGGTCGCATCTTCTTCAACCAGGGATTTAAGCTTTGGGAAACAGGGCATAATGGAAAGGTTGCATCTTTCAACGCCTCATTCCTTATCAATATTTATCGTGTTAATGGCACCACTCCTGCTGAAGGGCTTGCCTTCTTGATTGCACCCGAAACAGAGCCACCAGCAAATAGTTATGGGCAGTATTTGGGTTTGACCAATTCTATCAGTGATGGAAACCCCAGTAACCAGTTTGTTGCCATTGAATTTGATACCTTCAAACAAGAGTTCGACCCAGATGACAATCACATAGGACTTGATATCAATAGTGTGGTCTCCAAAAAAAATGTTTCTTTGGACAAGTTTGGAATAGAGCTGGCTCCTGAAGGTACCAAGTTCTACGTGGTGTGGATTGAGTACAATGGTACAAGCAAAGTGCTTGATGTTTATATTGTAGAACAACCTGACAGGTATGCCCCGACAGTAAACAAGCCTGGAAAGCCCGTATTAACCTCAGATCTCGACCTCAGTACCATTGTCAGGCAAAATTCTTACTTTGGTTTTGCAGCTTCCACTGGGAACTTTTATCAGTTGAACTGTGTGCTGAAATGGAATCTTACTGTAGAGGCTTTACCTGGGGATGGTAGCAGTACTGGACATGTGTTGAAGATTGCGTTGGGGGTAGGCGTACCAGTTTTTGTGTTGCTTTTGTTAAGTGTTGCTGGATTTGGTTATTACCTGCATAGGAGAAAAATCACGACTTCTGGCTCTAATATTCTGGGTGCACTGAAGAGTCTTCCAGGGGTTCCAAGAGAGTTTAGCTACAAGGATCTCAAGCAGGCCACACATAATTTCGATGAGAAAAACAAGCTTGGCCAAGGTGGGTTTGGCGTGGTCTACAAAGGTCTGCTGGGAAAAGAGAAGTTGGAAATTGCAGTCAAGAAATTCTCTCGAGATAACATCAAAAGCAAAGATGATTTCTTGGCTGAGCTAACCATTATTAATCGACTTCGTCACAAACACCTTGTTCGTTTGCTTGGATGGTGTCACCAAAATGGTGTATTGCTTTTGGTGTACGAGTTCATGCCCAATGGCAGCCTGGACGCTCACCTTTTCTCAGAGCCAGGAAAAAGCGCAACCACCATAAGCTGGCAAGTCAGATATAAAATAGCTGCAGGAGTAGCATCTGCTTTGCACTATCTGCACGATGAGTATGACCAGAAAGTTGTGCATAGGGATCTCAAAGCCAGCAACATCATGTTAGACTCAAACTTCAACGCTCGTCTAGGAGATTTCGGTTTAGCTCGAGCTTTAGAACATGAGAAAACATCCTATGCAGAACTGTCAGGAGTACCTGGCACCATTGGTTACATTGCCCCCGAGTGCTTCCACAACGGAAAAGCAACTTGTGAATCAGATGTATATGGATTTGGGGCCGTACTGCTTGAAGTAGTGTGCGGTCAACGGCCATGGACAAAGAACGAGGGCTTTCAGTTCTTGGTTGACTGGGTTTGGTATCTACATCGAGATGGAAGGATATTACAGGCAGTAGATGGAAGGCTAGGAAACGAGTATGTGGTTGAAGAAGCAGAGAGGCTTTTGTTTCTGGGGCTTGCCTGCTCTCATCCTTCTCCTAGTGACAGACCAAAAGCACAAGAAATTGTTCAGATTATATCAGGATCAGTCCCTGTCCCTCACGTTCCAGCATTCAAGCCAGCTTTTGTTTGGCCATCCACACCAGCAGGGAGCTCCATTGCTGATTTTTCAACGGGAACCTCAGAGTTTACATGCATAAACACTAATTCGTCTTTGGAATTTGGACGCAGTGATAGCTCCATTGTTTAA 2052 0.4381 MGPTQLLNLCFSLIATIILLYQTHISEAQTKTNSFVFGPFNASYYNTFDVIQPAAINNEALQVTPDSVGNFSLTNNSGRIFFNQGFKLWETGHNGKVASFNASFLINIYRVNGTTPAEGLAFLIAPETEPPANSYGQYLGLTNSISDGNPSNQFVAIEFDTFKQEFDPDDNHIGLDINSVVSKKNVSLDKFGIELAPEGTKFYVVWIEYNGTSKVLDVYIVEQPDRYAPTVNKPGKPVLTSDLDLSTIVRQNSYFGFAASTGNFYQLNCVLKWNLTVEALPGDGSSTGHVLKIALGVGVPVFVLLLLSVAGFGYYLHRRKITTSGSNILGALKSLPGVPREFSYKDLKQATHNFDEKNKLGQGGFGVVYKGLLGKEKLEIAVKKFSRDNIKSKDDFLAELTIINRLRHKHLVRLLGWCHQNGVLLLVYEFMPNGSLDAHLFSEPGKSATTISWQVRYKIAAGVASALHYLHDEYDQKVVHRDLKASNIMLDSNFNARLGDFGLARALEHEKTSYAELSGVPGTIGYIAPECFHNGKATCESDVYGFGAVLLEVVCGQRPWTKNEGFQFLVDWVWYLHRDGRILQAVDGRLGNEYVVEEAERLLFLGLACSHPSPSDRPKAQEIVQIISGSVPVPHVPAFKPAFVWPSTPAGSSIADFSTGTSEFTCINTNSSLEFGRSDSSIV* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00578 683 FunFam probable L-type lectin-domain containing receptor kinase S.5 431 632 - -
Pte12g00578 683 Gene3D Transferase(Phosphotransferase) domain 1 431 631 - -
Pte12g00578 683 PANTHER - 63 634 - -
Pte12g00578 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 278 IPR013320 -
Pte12g00578 683 SMART serkin_6 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00578 683 SUPERFAMILY Protein kinase-like (PK-like) 335 626 IPR011009 -
Pte12g00578 683 CDD lectin_legume_LecRK_Arcelin_ConA 34 277 IPR001220 GO:0030246
Pte12g00578 683 FunFam probable L-type lectin-domain containing receptor kinase S.5 339 430 - -
Pte12g00578 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Pte12g00578 683 Pfam Legume lectin domain 33 278 IPR001220 GO:0030246
Pte12g00578 683 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
Pte12g00578 683 Gene3D - 31 287 - -
Pte12g00578 683 ProSitePatterns Protein kinases ATP-binding region signature. 360 384 IPR017441 GO:0005524
Pte12g00578 683 Pfam Protein kinase domain 355 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00578 683 ProSiteProfiles Protein kinase domain profile. 354 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00578 683 CDD STKc_IRAK 360 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00578 Pte-Chr12 5175607 5179092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00578 76 663 Receptor kinase-like Gene Family AT5G55830 38.523 7.28e-128 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pte12g00578 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00578 - - qsa:O6P43_033478 973