Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00575 ATGAGTGATATCAAGGAAAATGATGAATCTGGGCAAGACGAGCCAGTGCCTATGGATGAAGACCAGAAGCTAGAGGATACACAAGTTCGAGCTCAGGACGAGCCTGCTCCTCCTTCACTAGTGGACAACGCTGCAAATAGTACTGGTAATAAGAAGGTAATGGCAGAACATGAGGATAGGAAGATGGAAGTTGATGGTGATCCAAAGGCTGTTACTGAATCGAAGGATCAAGATTCTCTTCAGTCAGTGCCGGTGAAAGATACCACTCAAAATTCGCTTCAACCTGAAGGTCATGACACTCTTGATGTTAAGACTGTGGTGGATGATACTAATGTAGACGATGCGTGCAATCAAGCTGATAAAGCCAGCCAAGTCAATCAGGTAGATGAAGCTATGGAAGGCAAGGAGGTTAAGGAAGCTGACAAAGTCAACTGGGCTGATAAAAGTGGCGAATCTAATGAAAGGAGTGAATCTGAGAAATTGAATAACACTAAGGAAGCCCGTGAGACTGAACAAATCAGTCAACCCGATAATGCGCATGAAGTCAAGCAATCCTGTGAAGCCAGTGGGGTTAATGAAGCTAGTCAGATCAAGGGAGCTATTGAGGTTAAAGATTTGCCTGAAAAAGATGTGGCTAAGGAGAGTAACGTGGATATGCCTTCCAATGTTGACCCTGCCTCTGATATTAAGATGGAAGGTACCGAAGAACCAGAAGGTAAAAAGGAACTTATTAGTGACTCTGGACCTACACAACAAAGTAACCCTTCAACACCTGAAGCTGTCCCTCCTGATACCAAAGATGAAAAAGAGAATCAGGTAGAAGGGAAGAATGAGTTTGTTGAGAAAGAAAAGCAAGTCGTTAGTGAGGTGGAAAATATAAATAAGGAAGGCAATACTCCTTCAGAGAACAACAAGCATGCTAGTACCCATGCACAGAATGGTACTTCAGGCTTGAAGCATTCTTTCCTAGATGATGATCATGCATATGGTGGCAATGTGTCAGGAACTGAGGAGGAGCAATCAGCTTTCATGAAGGAGCTTGAAAATTTCTTTAGGGAGAAGTGTATGGAATTCAAGCCTCCTAAGTTCTATGGAGAGGGTCTCAATTGCCTCAAGTTATGGAGAGCTGTGATGAGATTGGGTGGCTACGATAAGGTTACTTCTTGTAAATTATGGCGGCAAGTGGGAGAGTCTTTCAAACCACCCAAGACTTGTACAACAGTTTCCTGGACATTTCGAGGATTCTATGAGAAGGCACTTCTTGAATATGAGCGGCATATGACTCAAGGTGGTGAGATCGTGGTAGCTCCTGTTGCCTCCCCTTCTGAACCTATAAGTAACGAACAACAGACTCCAGGATCAGGTAGAGCAAGGAGGGATGCTGCTGCACGAGCCATGCAAGGGTGGCATTCACAACGTCTTCTTGGTAATGGTGAAGTTAGTGATCCTGTCATAAAGGATAAGAATTCAATGTCCCTACAGAAACGTGAGAAGCAACTTAAAAGCTTCAATTTACATAAACGTAAGAAACCACCTTACTTGGATAATACGGTCAAAGCAGCACGTAGTAAACCTTCTAAACCACAGGTGGACACCGCAGTAGTAGATATTGGACCGCCTGCTGATTGGGTGAAGATAAATGTGCAAAAGACTAAAGATTGTTTTGAGGTCTACGCTTTGGTTCCAGGGCTTCTGCGTGAAGAGGTTCGTGTCCAATCAGATCCAGCTGGACGTCTAGTGATAACTGGTGAACCTGAGCAGCTTGATAATCCATGGGGTGTGACCCCCTTCAAAAAGGTCGTCACTTTGCCTTCAAGAATTGATCCACATCAGACTTCAGCTGTTGTCACCTTGCATGGCCAGTTGTTCGTCCGGGTACCCTTTGAGCAGTCAGAGTAG 1899 0.4439 MSDIKENDESGQDEPVPMDEDQKLEDTQVRAQDEPAPPSLVDNAANSTGNKKVMAEHEDRKMEVDGDPKAVTESKDQDSLQSVPVKDTTQNSLQPEGHDTLDVKTVVDDTNVDDACNQADKASQVNQVDEAMEGKEVKEADKVNWADKSGESNERSESEKLNNTKEARETEQISQPDNAHEVKQSCEASGVNEASQIKGAIEVKDLPEKDVAKESNVDMPSNVDPASDIKMEGTEEPEGKKELISDSGPTQQSNPSTPEAVPPDTKDEKENQVEGKNEFVEKEKQVVSEVENINKEGNTPSENNKHASTHAQNGTSGLKHSFLDDDHAYGGNVSGTEEEQSAFMKELENFFREKCMEFKPPKFYGEGLNCLKLWRAVMRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLEYERHMTQGGEIVVAPVASPSEPISNEQQTPGSGRARRDAAARAMQGWHSQRLLGNGEVSDPVIKDKNSMSLQKREKQLKSFNLHKRKKPPYLDNTVKAARSKPSKPQVDTAVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVITGEPEQLDNPWGVTPFKKVVTLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00575 632 SUPERFAMILY HSP20-like chaperones 541 628 IPR008978 -
Pte12g00575 632 ProSiteProfiles ARID domain profile. 337 428 IPR001606 GO:0003677
Pte12g00575 632 Gene3D - 337 433 IPR036431 GO:0003677
Pte12g00575 632 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 132 631 IPR045147 GO:0006357
Pte12g00575 632 MobiDBLite consensus disorder prediction 291 319 - -
Pte12g00575 632 MobiDBLite consensus disorder prediction 52 74 - -
Pte12g00575 632 SMART ARID_2 334 424 - -
Pte12g00575 632 MobiDBLite consensus disorder prediction 441 460 - -
Pte12g00575 632 MobiDBLite consensus disorder prediction 245 260 - -
Pte12g00575 632 CDD ARID 339 424 - -
Pte12g00575 632 MobiDBLite consensus disorder prediction 75 98 - -
Pte12g00575 632 CDD ACD_sHsps_p23-like 551 627 - -
Pte12g00575 632 MobiDBLite consensus disorder prediction 262 290 - -
Pte12g00575 632 SMART bright_3 338 429 IPR001606 GO:0003677
Pte12g00575 632 MobiDBLite consensus disorder prediction 1 101 - -
Pte12g00575 632 Gene3D - 529 632 IPR008978 -
Pte12g00575 632 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 532 632 IPR002068 -
Pte12g00575 632 MobiDBLite consensus disorder prediction 229 243 - -
Pte12g00575 632 Pfam ARID/BRIGHT DNA binding domain 340 424 IPR001606 GO:0003677
Pte12g00575 632 SUPERFAMILY ARID-like 337 434 IPR036431 GO:0003677
Pte12g00575 632 MobiDBLite consensus disorder prediction 131 176 - -
Pte12g00575 632 MobiDBLite consensus disorder prediction 121 337 - -
Pte12g00575 632 FunFam AT-rich interactive domain-containing protein 3 337 436 - -
Pte12g00575 632 MobiDBLite consensus disorder prediction 1 30 - -
Pte12g00575 632 FunFam AT-rich interactive domain-containing protein 3 524 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00575 Pte-Chr12 5148717 5154490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00575 270 630 ARID Transcription Factor Family AT1G76510 58.491 4.40e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pte12g00575 ARID 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00575 - - gmx:100791081 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00575 12 5148717 5154490 Pte12g00575 12 5148717 5154490 RCT