Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00566 ATGACTCGCCTAGTGAGAGTTCTACAAGCCACCACCGCCGCCGTTAGAAATAATGGTAGTGAACATTCGACAACAACAACAAGCAACATGGCGCAATCGGCATCAGCACCGCCACCAGAGGCTGCCGCGTTAGAGTCAGACTTCGTGGTAATTCTAGCCGCTCTTCTTTGTGCTCTTATAGGAGTAGTGGGGCTAATTGCTGTGGCACGGTGCTCTTGCCTCCGACGCGGTGGAGGGGTAGCTGCAATTCGAGCTCCGGCTAACAAAGGGCTAAAGAAGAAGGTGCTTCAGTCTCTTCCAAAATTCACTTACATCGGCGGCGGCGGCGGCGGCGGCAGCAGCAACAGCGACAGTAATAACGATAACAACTGCTACAAAAGGTGGATGGTTACATCAGACTGTGCTATCTGCTTGGCTGAGTTCCAAGAAGGAGATGAGATCCGAGTCTTGCCTCAGTGTGGCCATGGTTTTCATCTGGGTTGTATCGACACATGGCTTGTGTCACACTCATCTTGCCCTTCTTGTAGGCAAATTCTTGTTGCACCAAGGTGTAAGAAGTGTGGACTATATCCCGCTATGGCTGGGGGGCGCGGCGGCAGCGGAGTGGTGGTGGTTACAGTCAATGAGAGTGAAATGAGAGCCGGAGAAGCTGCCAATGCCAGTGAAGTTGGTGCAAGCGGTGAAGGTCAGCATCAAGCTGATAATGACAATGGTAACAATACAAACACTATTCCTAATGACAATCAAAGTGGCAATAGTACTAGTACTAGTACTACTTTCTTGCCTTAG 789 0.5044 MTRLVRVLQATTAAVRNNGSEHSTTTTSNMAQSASAPPPEAAALESDFVVILAALLCALIGVVGLIAVARCSCLRRGGGVAAIRAPANKGLKKKVLQSLPKFTYIGGGGGGGSSNSDSNNDNNCYKRWMVTSDCAICLAEFQEGDEIRVLPQCGHGFHLGCIDTWLVSHSSCPSCRQILVAPRCKKCGLYPAMAGGRGGSGVVVVTVNESEMRAGEAANASEVGASGEGQHQADNDNGNNTNTIPNDNQSGNSTSTSTTFLP* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00566 262 MobiDBLite consensus disorder prediction 17 37 - -
Pte12g00566 262 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 34 188 - -
Pte12g00566 262 Pfam Ring finger domain 133 176 IPR001841 -
Pte12g00566 262 SUPERFAMILY RING/U-box 133 182 - -
Pte12g00566 262 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Pte12g00566 262 SMART ring_2 134 175 IPR001841 -
Pte12g00566 262 CDD RING-H2_EL5-like 133 176 - -
Pte12g00566 262 MobiDBLite consensus disorder prediction 215 262 - -
Pte12g00566 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 181 IPR013083 -
Pte12g00566 262 MobiDBLite consensus disorder prediction 225 262 - -
Pte12g00566 262 MobiDBLite consensus disorder prediction 17 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00566 Pte-Chr12 5065817 5066916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00566 42 187 C3H Transcription Factor Family AT1G20823 58.228 8.32e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00566 - - adu:107487390 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00566 12 5065817 5066916 Pte12g00566 12 5065817 5066916 RCT
Pte14g00802 14 29588646 29589981 Pte12g00566 12 5065817 5066916 RCT