Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00562 ATGATGAGGGAATCGACTCTTACAGGAAAGGGGGCTACCATGCTGTCAGAATCGGCGATCAGTTTGCAGGTGGCCGATATGTTGCTCAGAGGAAACTGGGTTGGGGTCAATTCTCCACCGTCTGGCTTGCCTATGATACTCAATCCTCTCTATTATACTGTCCAGATGTCGTCCTGCGGGATTTCTAAGAGATATGTTGCCCTTAAAATACAGAAAAGTGCTCAACAGTTTGCCCAAGCTGCTCTTCACGAAATAGAAATTCTTTCAGCAATTGCGGAAGGTGACCCCTCGAATTCCAACTGCGTTGTACAATTGGTTGACCACTTTAAGCACACAGGCCCAAATGGTCAACATTTGTGTATGGTCCTTGAATTTCTAGGGGATAGTTTACTTCGTCTTATAAGGTATAACCGATACAAAGGTCTTCCCATGAATAAAGTTAGGGAGATTTGCAGATGTGTTTTGATTGGTCTGGATTACTTGCATAGAGAACTTCGTATCATCCACACTGATCTAAAACCTGAAAATATACTTTTATGTTCAACCATTGACCCTGCTAAAGACCCCATTAGATCTGGTACAGCGCCAATTCTCGAACGTCCTGAGGGAAATCCGAATACTGGAACGACCATGAATCTGATAGAGAAAAAGTTAAAGAGGAGGGCAAGGAGAGCAGTCGCTAGGATTTCTGAAAGACGAGATTCGATGGGAGAATTGGTAAAAACTGAGAGAAATGTGGATGGCGTTGATGCAAGATGCAAGGTAGTAGATTTTGGAAATGCATGCTGGCATGATAAGCAGATTGCAGAAGAAATTCAGACTAGGCAGTATAGGGCTCCCGAAGTAATATTGCAGTGTGGATATTCCTTCTCTGCTGATATGTGGTCTTTTGCTTGCACTGCTTTTGAGCTTGCTACTGGTGAAATGTTGTTTACTCCTAAGGAAGGTCACGGCTATAGTGAGGATGAGGATCATCTTGCTCTGATGATGGAACTCCTTGGAAAGATGCCGCGGAAGGTAGCTATTGGAGGACTGCGTTCTAAAGATTATTTTGACCGACATGGCGATCTGAAAAGAATCAGAAGGCTAAAATTCTGGCCTCTTGACAAACTACTGGTTGATAAGTTCAAATTTTCGCAAGCTGAAGCTCGTGAGTTTGCAGAGTTCATCTGTCCTATTCTTGATTTTTCGCCAGAGAAGCGACCCACTGCTCAGCAGCTCCTCCAACATCCATGGCTGAATGTCAAAAGTTCAAGTCAGAATGAAAAGAGTAAAGATTGCAGTGTGGGAAACGTGAATGTTGGAATGAGTAACCTCCAAATTAAGGTGGGGAAGTGA 1338 0.435 MMRESTLTGKGATMLSESAISLQVADMLLRGNWVGVNSPPSGLPMILNPLYYTVQMSSCGISKRYVALKIQKSAQQFAQAALHEIEILSAIAEGDPSNSNCVVQLVDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPMNKVREICRCVLIGLDYLHRELRIIHTDLKPENILLCSTIDPAKDPIRSGTAPILERPEGNPNTGTTMNLIEKKLKRRARRAVARISERRDSMGELVKTERNVDGVDARCKVVDFGNACWHDKQIAEEIQTRQYRAPEVILQCGYSFSADMWSFACTAFELATGEMLFTPKEGHGYSEDEDHLALMMELLGKMPRKVAIGGLRSKDYFDRHGDLKRIRRLKFWPLDKLLVDKFKFSQAEAREFAEFICPILDFSPEKRPTAQQLLQHPWLNVKSSSQNEKSKDCSVGNVNVGMSNLQIKVGK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00562 445 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 240 424 - -
Pte12g00562 445 SMART serkin_6 53 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00562 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Pte12g00562 445 ProSiteProfiles Protein kinase domain profile. 22 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00562 445 Gene3D Transferase(Phosphotransferase) domain 1 94 413 - -
Pte12g00562 445 SUPERFAMILY Protein kinase-like (PK-like) 61 414 IPR011009 -
Pte12g00562 445 Gene3D Phosphorylase Kinase; domain 1 62 125 - -
Pte12g00562 445 Pfam Protein kinase domain 63 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00562 445 Pfam Protein kinase domain 251 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00562 445 FunFam Serine/threonine-protein kinase SRPK 119 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00562 Pte-Chr12 5023916 5027652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00562 51 414 EF-hand Containing Proteins AT5G22840 50.000 7.48e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Pte12g00562 Pkinase 6.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00562 K08832 - qsa:O6P43_033508 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00562 12 5023916 5027652 Pte12g00562 12 5023916 5027652 RCT