Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00558 ATGATTGACTGGGAGAATCAGCAATTGCAGCAACAGCAGCTTCAACAACAACTTCAGCAGCATGGGCTTCATCTGCAAAATGCACAGCAGCAGCTGCAGCAAATACAGAGTGGGAGTGTTAACGGTAATGAGGGGGTAGGAGGAGCAATTTATGTGAAAGTGATGACTGACGAGCAATTGGAAACTTTAAGGAAGCAAATAGCTGTATATCGCACTATTTGTGAGCAGTTGGTTGAAGCTCATAAGACTCTTACTGCTCAGCAAGATCTTGCAGGGGCAAGGCTAGGAAGTTTATACTGTGACCCCTTCATGACATCTACTGGCCACAAAATATCCTCTAGACAACGTTGGACTCCAACTCCTATGCAGCTTCAGATTCTTGAGAGTATATTTGATCAAGGGAATGGTACACCAAGCAAACAGAAGATAAAAGACATAACAGCCGAACTAAGCCAGCATGGCCAAATTTCTGAAACAAATGTTTATAATTGGTTCCAAAATAGGCGTGCACGATCGAAGAGGAAACAACAAAATTCAGTATCCAACAATAATCCCACAGAATCAGAAGTGGAGGCTGAAGTTGAGTCAGCTAAGGACAAAATGACAAGAGCACGGGATCCTTGTTCTCTGTCCCAGCATAGCTCAGTTCCAAGACTTGATGAGATGTCCTTTCAGAACCCTGAAATATGTTCTAATATGAAGTACCTTGATACTCAGATCACGAAGGCAGACTCCATGATTTCATCAGATGGTGTTCTAAAAGCCACAAGTTTAGGTCCTATACCTATGTTTGATGGGAATGAAATGCTCTTAAACTCAAGAAATGATTACATGGCTGGCAAGAGCTTCAACCAACTTCATTTTTACCAGCAAGGGGGAGACTCAGACTACCTCATGACAGAATGA 906 0.4249 MIDWENQQLQQQQLQQQLQQHGLHLQNAQQQLQQIQSGSVNGNEGVGGAIYVKVMTDEQLETLRKQIAVYRTICEQLVEAHKTLTAQQDLAGARLGSLYCDPFMTSTGHKISSRQRWTPTPMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQQNSVSNNNPTESEVEAEVESAKDKMTRARDPCSLSQHSSVPRLDEMSFQNPEICSNMKYLDTQITKADSMISSDGVLKATSLGPIPMFDGNEMLLNSRNDYMAGKSFNQLHFYQQGGDSDYLMTE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00558 301 SMART HOX_1 112 179 IPR001356 GO:0003677
Pte12g00558 301 MobiDBLite consensus disorder prediction 176 190 - -
Pte12g00558 301 MobiDBLite consensus disorder prediction 169 214 - -
Pte12g00558 301 Coils Coil 11 31 - -
Pte12g00558 301 PANTHER WUSCHEL-RELATED HOMEOBOX 13 31 282 IPR044559 GO:0003700
Pte12g00558 301 Pfam Homeodomain 114 174 IPR001356 GO:0003677
Pte12g00558 301 CDD homeodomain 114 176 IPR001356 GO:0003677
Pte12g00558 301 Gene3D - 116 183 - -
Pte12g00558 301 ProSiteProfiles 'Homeobox' domain profile. 110 175 IPR001356 GO:0003677
Pte12g00558 301 SUPERFAMILY Homeodomain-like 112 178 IPR009057 -
Pte12g00558 301 MobiDBLite consensus disorder prediction 191 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00558 Pte-Chr12 5003710 5006078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00558 1 238 Wox Gene Family AT4G35550 57.255 7.33e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pte12g00558 Homeodomain 3.1e-18 CL0123