Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00556 ATGAAAGGCGCAAAATCGAAAGCTGATACTAGTAAGAACGATAATAGGCTGAAGAGCAAAAGTGCTGGCGTTGGAAAGAGGTCGAAGAAGGCGGCAAAGGATCCAAATAAGCCAAAGAGGCCACCTAGTGCCTTCTTTGTTTTTATGGAGCAATTCAGAGAACAATTCAAGAACGAAAATCCAAACAACAAGTCCGTTGCTGCTGTCGGCAAAGCTGCTGGTAAAAAATGGAAGTCAATGTCTGATGCTGAGAAAGCGCCCTATCAAGCAAAGGCTGACAAAAGAAAGCAAGAATTTGATGTATCGATCCAGGCCTACAACAAGAGAATGGCCGAGGGCAAGAATGGAGACGAGTCGAACAAGTCTAAGTCTGAGGTGCATGATGAAGATGAAGATGGAAGTGAAGAGGAGGATGATGGCTAG 423 0.4468 MKGAKSKADTSKNDNRLKSKSAGVGKRSKKAAKDPNKPKRPPSAFFVFMEQFREQFKNENPNNKSVAAVGKAAGKKWKSMSDAEKAPYQAKADKRKQEFDVSIQAYNKRMAEGKNGDESNKSKSEVHDEDEDGSEEEDDG* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00556 140 SMART hmgende2 37 108 IPR009071 -
Pte12g00556 140 MobiDBLite consensus disorder prediction 1 37 - -
Pte12g00556 140 MobiDBLite consensus disorder prediction 77 102 - -
Pte12g00556 140 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Pte12g00556 140 Gene3D High mobility group box domain 23 124 IPR036910 -
Pte12g00556 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Pte12g00556 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 138 IPR031061 -
Pte12g00556 140 MobiDBLite consensus disorder prediction 1 140 - -
Pte12g00556 140 CDD HMG-box_AtHMGB1-like 39 99 - -
Pte12g00556 140 MobiDBLite consensus disorder prediction 111 128 - -
Pte12g00556 140 SUPERFAMILY HMG-box 24 113 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00556 Pte-Chr12 4979664 4982712 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte12g00556 HMG_box 5.1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00556 K25507 - csv:101203658 177.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00556 12 4979664 4982712 Pte12g00556 12 4979664 4982712 RCT
Pte14g00814 14 29674379 29676257 Pte12g00556 12 4979664 4982712 RCT