Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00554 ATGGGTCTTTGCTTTGGTTCTGAAGCAAAGCATGGACCAAAATCTCACATCAGCAAACCTTCTACTTCCGGTACTTACAGCAAGAACGTTGAGTCATCTGCAACAGCAAGCAGTGTGGAACAGAGTCAATTCTCTGAGTTAGCAAGTGGGAGCCTTGACGAGTCGTATTGGGATCACAATGGTCAAATTTTGGATAGGCCTAATTTGAAAGAGTACACTTTTAATGATATGAAGGCTGCTACAAGGAATTTCAAGCCAGAAGCTTTGCTTGGTGAAGGAGGATTTGGAAAAGTTTACAAGGGTTGGTTGGATGAGAAAACACTCACACCAACTAAGGTTGGGACTGGAATGGTGGTTGCTATTAAGAAATTAAACCCAGAGAGTGTGCAGGGTGTTCAGGAGTGGCAGCTTAAACTTTTAGAAGAATCGATTCTTGATGACCGTGGTCATTTATACGTACAAAGTGATGTGTATGGTTTTGGTGTTGTGCTGCTTGAAATAATGACTGGTTTACGAGCAGTTGATACTAGGAGACCAAATGAACAGCAGAATCTGGTTGAATGGGTTAAGCCACAGTTGTCTCATAAAAAGAAGTTGAAAGCAATTATGGACACAAGGATTGAGGGACAGCATTCTTCCAAGGCATCTTTTGCGACTGGACAACTTGCCTTAAAATGCCTAGAAGCTGATCCAAGAAACCGTCCTTACATGGAAGAGGTAATGGAGACGTTGGAAAAGATTAAAGCAATGGATGAGAAACCGGAGGAGTCCAAAACAAGTCGCAGAAAATCTCCAGCTCCTCGTGCTGGCTAG 813 0.428 MGLCFGSEAKHGPKSHISKPSTSGTYSKNVESSATASSVEQSQFSELASGSLDESYWDHNGQILDRPNLKEYTFNDMKAATRNFKPEALLGEGGFGKVYKGWLDEKTLTPTKVGTGMVVAIKKLNPESVQGVQEWQLKLLEESILDDRGHLYVQSDVYGFGVVLLEIMTGLRAVDTRRPNEQQNLVEWVKPQLSHKKKLKAIMDTRIEGQHSSKASFATGQLALKCLEADPRNRPYMEEVMETLEKIKAMDEKPEESKTSRRKSPAPRAG* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00554 270 SUPERFAMILY Protein kinase-like (PK-like) 150 253 IPR011009 -
Pte12g00554 270 Gene3D Transferase(Phosphotransferase) domain 1 145 267 - -
Pte12g00554 270 Pfam Protein tyrosine and serine/threonine kinase 150 244 IPR001245 GO:0004672|GO:0006468
Pte12g00554 270 PANTHER OS01G0588500 PROTEIN-RELATED 35 136 - -
Pte12g00554 270 MobiDBLite consensus disorder prediction 1 29 - -
Pte12g00554 270 Gene3D Phosphorylase Kinase; domain 1 57 144 - -
Pte12g00554 270 SUPERFAMILY Protein kinase-like (PK-like) 59 127 IPR011009 -
Pte12g00554 270 ProSitePatterns Protein kinases ATP-binding region signature. 90 123 IPR017441 GO:0005524
Pte12g00554 270 MobiDBLite consensus disorder prediction 247 270 - -
Pte12g00554 270 ProSiteProfiles Protein kinase domain profile. 1 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00554 270 MobiDBLite consensus disorder prediction 247 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00554 Pte-Chr12 4963415 4966513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00554 149 266 Receptor kinase-like Gene Family AT4G02010 36.000 8.67e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pte12g00554 PK_Tyr_Ser-Thr 1.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00554 - - gmx:106796439 216.853