Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00551 ATGGGAGGTAACGGTGCCGTGGAAGAAACCAAGGAAACTACGGGCGGTGACAAAGTCGCCGTCAACATCCGTTGCTCTAACGGGTCGAAATTTTCTGTTCAGATTAATTTTGACTCTACCGTTGGGTCCTTCAAAGACGTAGTCGCTCAGAATTGCGATATCCCCGCCGACCAGCAGCGTCTGATTTATAAGGGTCGAATCTTGAAGGACGATCAAACCTTAACTAGCTACGGTTTGGAGGCAGATCATACTGTCCATTTGGTTAGAGGTTTTGCACCTGCTGCTTCACCGGCCAATGCAACTGCTGGAACCAATCCTACAGGCACATCTGCAACTTCAACCAATACCAGGAGTGCTCAATCTAATGATGGTTTGGGATTAGGAGGCCCAAATCTCAGAGCTTCTTTATTTCCTGGACTTGGTTTAGATGGGATTGGTGGCAATAACCATTTGTTTGGATCTGGGCTACCAGATTTTGAGCAAATGCATCAACAGTTGAGTCAGGACCCCAATATAATGAGGGAAATAATGAGCATGCCTGCTATTCAGAATCTCATGAATAATCCTGAAGTAATGCGGAATATGATTATAAATAATCCTCAAGTGCGAGAAATAGTTGATCGGAATCCTGAGCTAGGACATATACTTAATGATCCCAGCACTTTGCGCCAGACACTGGAAGCTGCTAGGAACCCTGAGCTTATGCGTGAGATGATGCGAAATACTGATAGAGCAATGAGCAATATTGAATCATCTCCTGAGGGATTCAACATGTTGAGGCGTATGCATGAAAATGTTCAAGAGCCATTCCTAAATGCTACAACCATGGCTGGAAATCAAGGGAATGGAAACTCTAACCCTTTTGAAGCACTTCTGGGAAACCAAGGTGGCCAGACCAGAGATCAAATGACAAACCCATCAACCACCAGTTCAGAAGCTACTGCTGGTTCTCCATCTCCCAATACCAATCCACTTCCAAATCCTTGGTCCTCTGCTGGCCGGACTGGAGGTGCTCCAACCAACCCCACCAGATCAGCATCTGCTGTCGATACCAGGCAACAGGCACCAATGGGCTTGGGAGGAGTTGGTCTTTCAGAGCTTGAAGGTTCCATGCTAGATCCTAATGTGGTGACTCAGTTAATGCAAAATCCAGCCATTTCCGAAATGATGCAAAGCCTCCTTTCGAACCCCCAGTATATGAACCAGATCCTTGGTATGAACCCTCAGCTTAGCAGCATGCTTGGTTCAAACTCTCAATTGAGAGAAATGATGCAAAACCCAGAAATCCTCCGCCAATTAACATCACCTGATACAATGCAGCAACTCTTGTCATTTCAGCAAGCGTTAATGTCTCAGATTAACCATGGACAGTCTGCACAAGATCCTCGTCAGACTGGTGGAGGTGCAGGATCATTGAACAGCATGGGTATGGAGATGTTGATGAACATGTTTGGTGGACTCGGGGCTGGAAACTTAGCTGGTCCTAACAGATCAGATGTGCCTCCGGAACAATTGTATGCAACACAGTTGACACAGCTTCAAGAGATGGGCTTTTTTGACTCACGAGAGAATATACAGGCTCTTATTGCCACCGCTGGAAATGTTCATGCTGCCATTGAGCGTCTTTTGGGGAACAACAATGGTCAGTAG 1650 0.4612 MGGNGAVEETKETTGGDKVAVNIRCSNGSKFSVQINFDSTVGSFKDVVAQNCDIPADQQRLIYKGRILKDDQTLTSYGLEADHTVHLVRGFAPAASPANATAGTNPTGTSATSTNTRSAQSNDGLGLGGPNLRASLFPGLGLDGIGGNNHLFGSGLPDFEQMHQQLSQDPNIMREIMSMPAIQNLMNNPEVMRNMIINNPQVREIVDRNPELGHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMHENVQEPFLNATTMAGNQGNGNSNPFEALLGNQGGQTRDQMTNPSTTSSEATAGSPSPNTNPLPNPWSSAGRTGGAPTNPTRSASAVDTRQQAPMGLGGVGLSELEGSMLDPNVVTQLMQNPAISEMMQSLLSNPQYMNQILGMNPQLSSMLGSNSQLREMMQNPEILRQLTSPDTMQQLLSFQQALMSQINHGQSAQDPRQTGGGAGSLNSMGMEMLMNMFGGLGAGNLAGPNRSDVPPEQLYATQLTQLQEMGFFDSRENIQALIATAGNVHAAIERLLGNNNGQ* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00551 549 CDD UBA_PLICs 506 544 - -
Pte12g00551 549 PANTHER UBIQUILIN 19 543 IPR015496 -
Pte12g00551 549 Gene3D - 192 252 - -
Pte12g00551 549 FunFam Ubiquitin domain-containing protein DSK2b 489 547 - -
Pte12g00551 549 Gene3D - 7 103 - -
Pte12g00551 549 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Pte12g00551 549 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Pte12g00551 549 SMART ubq_7 19 90 IPR000626 GO:0005515
Pte12g00551 549 MobiDBLite consensus disorder prediction 274 352 - -
Pte12g00551 549 MobiDBLite consensus disorder prediction 98 125 - -
Pte12g00551 549 CDD Ubl_Dsk2p_like 19 91 - -
Pte12g00551 549 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Pte12g00551 549 SUPERFAMILY Ubiquitin-like 12 104 IPR029071 -
Pte12g00551 549 SMART uba_6 506 544 IPR015940 -
Pte12g00551 549 SUPERFAMILY UBA-like 502 544 IPR009060 GO:0005515
Pte12g00551 549 Pfam UBA/TS-N domain 506 542 IPR015940 -
Pte12g00551 549 SMART CBM 407 442 IPR006636 -
Pte12g00551 549 SMART CBM 148 195 IPR006636 -
Pte12g00551 549 SMART CBM 365 403 IPR006636 -
Pte12g00551 549 SMART CBM 199 238 IPR006636 -
Pte12g00551 549 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 500 545 IPR015940 -
Pte12g00551 549 MobiDBLite consensus disorder prediction 453 472 - -
Pte12g00551 549 FunFam Ubiquitin domain-containing protein DSK2b 16 103 - -
Pte12g00551 549 Gene3D - 488 549 - -
Pte12g00551 549 MobiDBLite consensus disorder prediction 453 471 - -
Pte12g00551 549 MobiDBLite consensus disorder prediction 96 127 - -
Pte12g00551 549 MobiDBLite consensus disorder prediction 274 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00551 Pte-Chr12 4942069 4947050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00551 23 88 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 31.818 1.36e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00551 K04523 - tcc:18610658 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00551 12 4942069 4947050 Pte12g00551 12 4942069 4947050 RCT